Co-expression analysis

Gene ID Zm.5289.2.A1_a_at
Gene name hypothetical protein LOC100274172
Homology with ArabidopsisSimilar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=1e-30)
Module size 6 genes
NF 0.41
%ile 47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.95Zm.5289.2.A1_a_atAI600945hypothetical protein LOC100274172-1e-30At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.8094.00.95Zm.12546.2.A1_atAI770557--3e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.6179.50.95Zm.19037.1.S1_atCA404446--1e-30At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.5571.60.95Zm.455.2.A1_atBM078476dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex-2e-13At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.2622.70.95Zm.17510.1.A1_atCK144409hypothetical protein LOC100217109-6e-22At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.1912.80.95Zm.186.1.S1_atX71396.1Bowman-Birk type wound-induced proteinase inhibitor WIP1-1e+0At1g20000TAF11b (TBP-ASSOCIATED FACTOR 11b)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3641.30.91Zm.7753.1.A1_atBM337798hypothetical protein LOC100191438-3e-2At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.3336.00.92Zm.18148.1.A1_atCN844779--5e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2928.10.92Zm.19362.1.A1_atAY111241.1hypothetical protein LOC100274997-1e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.2724.60.89Zm.9514.1.A1_atBM269476hypothetical protein LOC100279704-3e-1At2g14500F-box family proteinO.I.H.G.S.X.
0.1912.80.94Zm.18409.1.A1_atCO532665hypothetical protein LOC100191200-5e+0At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.1811.60.94Zm.16281.2.S1_atCA409032Histone H3.2-9e-21At5g10980histone H3O.I.H.G.S.X.
0.1710.60.92Zm.17684.1.S1_atCK827950--2e+0At5g04260WCRKC2 (WCRKC THIOREDOXIN 2)O.I.H.G.S.X.
0.158.60.94Zm.10716.2.A1_atBI35945850S ribosomal protein L14-8e-6At1g17560HLL (HUELLENLOS)O.I.H.G.S.X.
0.147.70.93Zm.13944.6.S1_a_atAI795502glycine-rich RNA-binding protein 8-9e-10At3g26420ATRZ-1AO.I.H.G.S.X.
0.136.80.95Zm.16931.1.A1_s_atAI714400hypothetical protein LOC100279421-3e-1At5g46610unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.687.4GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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