Co-expression analysis

Gene ID Zm.5289.2.A1_a_at
Gene name hypothetical protein LOC100274172
Homology with ArabidopsisSimilar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=1e-30)
Module size 6 genes
NF 0.41
%ile 47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.95Zm.5289.2.A1_a_atAI600945hypothetical protein LOC100274172-1e-30At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.8094.00.95Zm.12546.2.A1_atAI770557--3e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.6179.50.95Zm.19037.1.S1_atCA404446--1e-30At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.5571.60.95Zm.455.2.A1_atBM078476dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex-2e-13At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.2622.70.95Zm.17510.1.A1_atCK144409hypothetical protein LOC100217109-6e-22At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.1912.80.95Zm.186.1.S1_atX71396.1Bowman-Birk type wound-induced proteinase inhibitor WIP1-1e+0At1g20000TAF11b (TBP-ASSOCIATED FACTOR 11b)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.687.4GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0320400, orthologous to the query gene, Zm.5289.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os10g0320400At2g33040-ATP synthase gamma chain, mitochondrial precursor(EC 3.6.3.14)1e-48At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.6787.2Os07g0495200At2g33040-ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14)1e-1At5g47030ATP synthase delta' chain, mitochondrialO.I.H.G.S.X.
0.5068.0Os03g0774200At2g33040-NADH-ubiquinone oxidoreductase subunit 8 (EC1.6.5.3)2e-71At1g79010NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)O.I.H.G.S.X.
0.4660.9Os05g0553000At2g33040-ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14)0At5g08670ATP binding / hydrogen ion transporting ATP synthase, rotational mechanismO.I.H.G.S.X.
0.4458.1Os08g0478200At2g33040-ATP synthase D chain, mitochondrial (EC 3.6.3.14)1e-29At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.3338.8Os04g0486600At2g33040-Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12)2e+0At1g09220pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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