Co-expression analysis

Gene ID Zm.5289.2.A1_a_at
Gene name hypothetical protein LOC100274172
Homology with ArabidopsisSimilar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=1e-30)
Module size 6 genes
NF 0.41
%ile 47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.95Zm.5289.2.A1_a_atAI600945hypothetical protein LOC100274172-1e-30At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.8094.00.95Zm.12546.2.A1_atAI770557--3e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.6179.50.95Zm.19037.1.S1_atCA404446--1e-30At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.5571.60.95Zm.455.2.A1_atBM078476dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex-2e-13At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.2622.70.95Zm.17510.1.A1_atCK144409hypothetical protein LOC100217109-6e-22At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.1912.80.95Zm.186.1.S1_atX71396.1Bowman-Birk type wound-induced proteinase inhibitor WIP1-1e+0At1g20000TAF11b (TBP-ASSOCIATED FACTOR 11b)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.687.4GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig2722_at, orthologous to the query gene, Zm.5289.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.2Contig2722_atAt2g33040--2e-32At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.
0.2935.5Contig1326_s_atAt2g33040--7e-2At1g22885unknown proteinO.I.H.G.S.X.
0.2935.5Contig333_M_atAt2g33040--O.I.H.G.S.X.
0.2326.1Contig24431_atAt2g33040--4e+0At1g11475NRPB10O.I.H.G.S.X.
0.2021.1Contig10570_atAt2g33040--6e-8At4g38250amino acid transporter family proteinO.I.H.G.S.X.
0.1919.6Contig7314_atAt2g33040--5e-3At1g76970VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.1919.6Contig3645_atAt2g33040--7e-9At5g55850NOIO.I.H.G.S.X.
0.1818.2Contig8444_atAt2g33040--3e-6At2g28250NCRKO.I.H.G.S.X.
0.1716.9Contig20398_atAt2g33040--8e-3At2g42620MAX2 (MORE AXILLARY BRANCHES 2)O.I.H.G.S.X.
0.1716.9Contig23393_atAt2g33040--3e-1At1g54410dehydrin family proteinO.I.H.G.S.X.
0.1716.9HA11F23u_atAt2g33040--1e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.1615.3Contig6423_atAt2g33040--1e-3At2g34040apoptosis inhibitory 5 (API5) family proteinO.I.H.G.S.X.
0.1615.3Contig3361_atAt2g33040--8e-4At1g01720ATAF1O.I.H.G.S.X.
0.1514.1Contig8766_atAt2g33040--8e-7At4g12130aminomethyltransferaseO.I.H.G.S.X.
0.1514.1HU09N18u_s_atAt2g33040--2e+0At1g09370enzyme inhibitor/ pectinesteraseO.I.H.G.S.X.
0.1412.9Contig10647_atAt2g33040--2e-46At2g20930-O.I.H.G.S.X.
0.1311.6HVSMEm0005B12r2_atAt2g33040--3e-1At3g23727SCRL12 (SCR-Like 12)O.I.H.G.S.X.
0.1311.6Contig16119_atAt2g33040--8e+0Atcg01060-O.I.H.G.S.X.
0.1210.4Contig23773_atAt2g33040--1e+0At5g14070ROXY2O.I.H.G.S.X.
0.108.4Contig13216_atAt2g33040--1e-5At3g12620protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.054.1Contig13674_atAt2g33040--2e+0At5g17073unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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