CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5289.2.A1_a_at

Gene name hypothetical protein LOC100274172
Homology with Arabidopsis Similar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=1e-30)

Module size 6 genes

NF 0.41

%ile 47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.95 Zm.5289.2.A1_a_at AI600945 hypothetical protein LOC100274172 - 1e-30 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) O.I. H.G. S.X.
0.80 94.0 0.95 Zm.12546.2.A1_at AI770557 - - 3e+0 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) O.I. H.G. S.X.
0.61 79.5 0.95 Zm.19037.1.S1_at CA404446 - - 1e-30 At3g50530 CRK (CDPK-related kinase) O.I. H.G. S.X.
0.55 71.6 0.95 Zm.455.2.A1_at BM078476 dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex - 2e-13 At3g13930 dihydrolipoamide S-acetyltransferase, putative O.I. H.G. S.X.
0.26 22.7 0.95 Zm.17510.1.A1_at CK144409 hypothetical protein LOC100217109 - 6e-22 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) O.I. H.G. S.X.
0.19 12.8 0.95 Zm.186.1.S1_at X71396.1 Bowman-Birk type wound-induced proteinase inhibitor WIP1 - 1e+0 At1g20000 TAF11b (TBP-ASSOCIATED FACTOR 11b) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.6 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1 98.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.6 87.4 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g33040, orthologous to the query gene, Zm.5289.2.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.82 90.9 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA O.I. H.G. S.X.
0.83 91.4 At5g67590 836895 FRO1 (FROSTBITE1) Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. O.I. H.G. S.X.
0.67 81.6 At1g16700 838239 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative F:NADH dehydrogenase (ubiquinone) activity, metal ion binding;P:unknown;C:mitochondrion, respiratory chain complex I;BOAPMF O.I. H.G. S.X.
0.67 81.6 At4g29480 829069 mitochondrial ATP synthase g subunit family protein F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO O.I. H.G. S.X.
0.67 81.6 At5g47570 834807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;PO O.I. H.G. S.X.
0.58 73.8 At5g52840 835361 NADH-ubiquinone oxidoreductase-related F:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPO O.I. H.G. S.X.
0.55 70.6 At4g34700 829622 complex 1 family protein / LVR family protein F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO O.I. H.G. S.X.
0.40 50.8 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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