Co-expression analysis

Gene ID Zm.5279.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g64310: AGP1 (ARABINOGALACTAN PROTEIN 1) (HF=8e+0)
Module size 25 genes
NF 0.44
%ile 53.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.96Zm.5279.1.S1_atAY106402.1--8e+0At5g64310AGP1 (ARABINOGALACTAN PROTEIN 1)O.I.H.G.S.X.
0.6785.80.97Zm.3423.1.A1_atAY110813.1hypothetical protein LOC100280412-3e-3At4g24040TRE1 (TREHALASE 1)O.I.H.G.S.X.
0.6481.70.97Zm.2094.1.S1_atCD651096hypothetical protein LOC100192908-8e-19At2g36060ubiquitin-conjugating enzyme family proteinO.I.H.G.S.X.
0.5571.60.97Zm.18436.1.A1_atCO521866--6e-1At4g19003VPS25O.I.H.G.S.X.
0.5267.30.97Zm.2378.1.A1_atBQ485596--8e-10At1g70750unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.6293.1.A1_atCF038760hypothetical protein LOC100216905-4e+0At5g08400unknown proteinO.I.H.G.S.X.
0.4861.30.97Zm.7941.1.A1_atBM080529--1e+0At3g50040unknown proteinO.I.H.G.S.X.
0.4861.30.97Zm.851.1.S1_atCF007204hypothetical protein LOC100275940-3e-8At1g10590DNA-binding protein-relatedO.I.H.G.S.X.
0.4861.30.97Zm.1158.1.A1_atAY107067.1--4e-31At5g10270CDKCO.I.H.G.S.X.
0.4759.90.96Zm.9201.1.A1_atBM340120hypothetical protein LOC100272902-6e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)O.I.H.G.S.X.
0.4658.40.97Zm.10479.1.S1_atBQ486450--5e+0At5g13990ATEXO70C2 (exocyst subunit EXO70 family protein C2)O.I.H.G.S.X.
0.4658.40.97Zm.15451.1.S1_atCD439729hypothetical protein LOC100192101-5e+0At2g15830unknown proteinO.I.H.G.S.X.
0.4455.70.97ZmAffx.1118.2.A1_atAW267189--8e-1At2g27360lipase, putativeO.I.H.G.S.X.
0.4352.80.97Zm.14496.1.A1_atCF014750sesquiterpene cyclase-like-1e+0At5g46710zinc-binding family proteinO.I.H.G.S.X.
0.4352.80.97Zm.19250.1.S1_atBG841370--3e-12At4g24740AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)O.I.H.G.S.X.
0.4251.30.97Zm.2016.1.S1_atAW566149zinc finger, C3HC4 type family protein-2e+0At5g51195unknown proteinO.I.H.G.S.X.
0.4251.30.97Zm.18795.1.S1_atCO526138hypothetical protein LOC100273526-2e-8At5g11350endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.4149.70.97Zm.9814.1.A1_atBM351590--4e+0At5g26840unknown proteinO.I.H.G.S.X.
0.3844.20.98Zm.18045.1.A1_atBM080270--8e-4At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.3538.90.97Zm.18816.1.A1_atCO527305indole-3-acetate beta-glucosyltransferase-1e+0At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.3336.00.97Zm.15194.1.A1_atBM334114--4e+0At1g16025unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.10534.1.A1_x_atCO049306receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.2828.10.98Zm.4883.1.A1_atAY107709.1Hypothetical protein LOC100216906-2e-5At1g07530SCL14 (SCARECROW-LIKE 14)O.I.H.G.S.X.
0.2828.10.97Zm.218.1.A1_a_atAB016802.1ABA stimulation MAP kinase-6e-42At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.2622.70.97Zm.5280.1.S1_atCK368650--2e-8At1g76760ATY1 (ARABIDOPSIS THIOREDOXIN Y1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.497.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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