Co-expression analysis

Gene ID	Zm.5277.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g39750: F-box family protein-related (HF=1e+0)
Module size	11 genes
NF	0.83
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.96	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.96	Zm.5231.1.S1_at	AW059997	-	-	2e-1	At2g44950	HUB1 (HISTONE MONO-UBIQUITINATION 1)	O.I.	H.G.	S.X.	Please select
0.87	96.4	0.97	Zm.7386.1.S1_at	BM334549	DNA binding protein	-	1e-1	At3g50330	HEC2 (HECATE 2)	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.97	Zm.7385.1.A1_at	CF626198	-	-	7e+0	At5g19473	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.4810.1.A1_at	AI745785	-	-	5e+0	At3g60390	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.481.1.S1_at	AF227632.1	mismatch binding protein Mus3	-	2e-8	At4g02070	MSH6 (MUTS HOMOLOG 6)	O.I.	H.G.	S.X.	Please select
0.82	94.6	0.97	Zm.5026.1.A1_at	AI600450	-	-	4e+0	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.97	Zm.3157.4.A1_at	AI734519	-	-	5e-1	At1g09220	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.97	Zm.675.2.S1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.97	Zm.7380.1.S1_at	BM078135	hypothetical protein LOC100280093	-	6e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5024.1.S1_at	AY111429.1	-	-	4e+0	At3g27210	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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