Co-expression analysis

Gene ID	Zm.5246.1.A1_at
Gene name	peroxiredoxin-5
Homology with Arabidopsis	Similar to At3g52960: peroxiredoxin type 2, putative (HF=3e-3)
Module size	6 genes
NF	0.62
%ile	83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.94	Zm.5246.1.A1_at	AI833388	peroxiredoxin-5	-	3e-3	At3g52960	peroxiredoxin type 2, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.94	Zm.6281.1.A1_at	BM078129	strictosidine synthase	-	1e-2	At1g08470	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.96	Zm.5092.1.S1_at	AI600799	hypothetical protein LOC100192838	-	2e-6	At5g11450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.2992.2.S1_s_at	AI881218	actin depolymerizing factor /// actin-depolymerizing factor 3	-	4e-5	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.6108.2.S1_at	CA399319	-	-	5e-37	At1g15290	binding	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.13205.3.A1_at	AI670579	-	-	6e-2	At1g04645	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM202280	B73xMo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
4.2	96.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202279	Mo17xB73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
3.6	95.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM202278	B73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
3.5	95.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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