Co-expression analysis

Gene ID	Zm.5237.1.A1_at
Gene name	hypothetical protein LOC100273890
Homology with Arabidopsis	Similar to At1g47260: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) (HF=2e-19)
Module size	6 genes
NF	0.46
%ile	56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.98	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.487.1.S1_a_at	AF181479.1	silky1	-	8e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.8376.1.S1_at	BM073880	hypothetical protein LOC100280303	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.18047.1.S1_at	CF623859	hypothetical protein LOC100275732	-	2e+0	At5g42250	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.2383.1.A1_at	BG842498	hypothetical protein LOC100275670	-	5e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1608449_at, orthologous to the query gene, Zm.5237.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	1608449_at	At1g47260	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1608703_at	At1g47260	ubiquitin-activating enzyme	-	1e-24	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.55	77.3	1615735_at	At1g47260	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	1622378_s_at	At1g47260	hypothetical protein LOC100252146	-	5e-10	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1616861_s_at	At1g47260	hypothetical protein LOC100244246	-	9e-11	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620906_s_at	At1g47260	hypothetical protein LOC100246670	-	2e+0	At1g32630	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1616941_at	At1g47260	hypothetical protein LOC100248410	-	2e-39	At1g07830	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1607275_at	At1g47260	hypothetical protein LOC100261812	-	7e-13	At3g15980	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	1614840_at	At1g47260	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.33	45.7	1612039_at	At1g47260	hypothetical protein LOC100266651	-	1e-18	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621991_at	At1g47260	hypothetical protein LOC100243393	-	1e-1	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1614599_at	At1g47260	hypothetical protein LOC100248579	-	1e-25	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	1618577_at	At1g47260	hypothetical protein LOC100257605	-	5e-7	At2g03290	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614946_at	At1g47260	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610373_at	At1g47260	hypothetical protein LOC100242638	-	1e-20	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1617936_at	At1g47260	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.19	20.9	AFFX-Vvi-actin-5_at	At1g47260	actin 1	-				O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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