CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5237.1.A1_at

Gene name hypothetical protein LOC100273890
Homology with Arabidopsis Similar to At1g47260: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) (HF=2e-19)

Module size 6 genes

NF 0.46

%ile 56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.98 Zm.5237.1.A1_at AY107290.1 hypothetical protein LOC100273890 - 2e-19 At1g47260 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) O.I. H.G. S.X.
0.60 77.8 0.98 Zm.487.1.S1_a_at AF181479.1 silky1 - 8e-3 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. H.G. S.X.
0.50 65.7 0.98 Zm.8376.1.S1_at BM073880 hypothetical protein LOC100280303 - 4e-1 At3g44590 60S acidic ribosomal protein P2 (RPP2D) O.I. H.G. S.X.
0.36 41.3 0.98 Zm.18047.1.S1_at CF623859 hypothetical protein LOC100275732 - 2e+0 At5g42250 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.27 24.6 0.98 Zm.2383.1.A1_at BG842498 hypothetical protein LOC100275670 - 5e+0 At2g13820 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.25 21.3 0.98 Zm.4271.2.A1_at AY103821.1 Isoflavone reductase-like1 - 2e-20 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g47260, orthologous to the query gene, Zm.5237.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. O.I. H.G. S.X.
0.84 91.9 At1g47420 841147 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;PO O.I. H.G. S.X.
0.78 88.6 At1g27450 839636 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. O.I. H.G. S.X.
0.76 87.4 At2g21870 816723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBA O.I. H.G. S.X.
0.71 84.2 At5g13450 831186 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPF O.I. H.G. S.X.
0.67 81.6 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. O.I. H.G. S.X.
0.57 73.8 At5g63510 836470 GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. O.I. H.G. S.X.
0.55 70.6 At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV O.I. H.G. S.X.
0.40 50.8 At1g22450 838851 COX6B (CYTOCHROME C OXIDASE 6B) subunit 6b of cytochrome c oxidase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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