Co-expression analysis

Gene ID Zm.5229.1.A1_at
Gene name ATP-dependent transporter ycf16
Homology with ArabidopsisSimilar to At3g10670: ATNAP7 (HF=4e-24)
Module size 7 genes
NF 0.25
%ile 21.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.97Zm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7O.I.H.G.S.X.
0.6077.80.97Zm.859.1.A1_atCF060267hypothetical protein LOC100191283-8e-1At4g28420aminotransferase, putativeO.I.H.G.S.X.
0.5065.70.97Zm.15306.1.A1_atCK369690phytol kinase-9e+0Atmg00160-O.I.H.G.S.X.
0.4455.70.98Zm.12954.1.A1_atAW066601ADP-ribosylation factor-1e-26At2g18390TTN5 (TITAN 5)O.I.H.G.S.X.
0.3131.60.97Zm.17849.1.S1_atAY110409.1hypothetical protein LOC100192672-1e-71At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.158.60.97Zm.17189.1.A1_atBM268883--5e+0At5g60540PDX2 (PYRIDOXINE BIOSYNTHESIS 2)O.I.H.G.S.X.
0.083.40.97Zm.9194.1.A1_atBM267243--1e+0At3g03456unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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