CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5220.1.S1_at

Gene name hypothetical protein LOC100279470
Homology with Arabidopsis Similar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0)

Module size 6 genes

NF 0.84

%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.5220.1.S1_at AI614989 hypothetical protein LOC100279470 - 1e+0 At5g36120 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) O.I. H.G. S.X.
0.91 99.0 0.98 Zm.5441.1.S1_at CO528962 hypothetical protein LOC100274317 - 3e+0 At3g23130 SUP (SUPERMAN) O.I. H.G. S.X.
0.83 95.6 0.98 Zm.18590.1.A1_at AW562614 exostosin-like - 1e+0 At5g22930 unknown protein O.I. H.G. S.X.
0.77 92.1 0.98 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.16482.2.A1_at BM337760 - - 9e-19 At3g09630 60S ribosomal protein L4/L1 (RPL4A) O.I. H.G. S.X.
0.55 71.6 0.98 Zm.1546.3.A1_x_at CK369824 - - 1e-6 At1g15270 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	0.98	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.
0.91	99.0	0.98	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.
0.83	95.6	0.98	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.
0.77	92.1	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.
0.67	85.8	0.98	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.0	0.97	Zm.6011.1.A1_at	AI738205	hypothetical protein LOC100280191	-	2e-10	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.75	90.8	0.97	Zm.3484.1.A1_at	AW438127	hypothetical protein LOC100273241	-	2e+0	At1g67700	unknown protein	O.I.	H.G.	S.X.
0.73	89.9	0.97	Zm.4561.2.A1_x_at	CO532693	-	-	6e+0	At5g65520	binding	O.I.	H.G.	S.X.
0.73	89.9	0.98	ZmAffx.240.1.S1_at	AI670252	-	-	3e+0	At5g11610	exostosin family protein	O.I.	H.G.	S.X.
0.71	88.2	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.
0.63	81.1	0.96	Zm.19059.1.A1_at	CO521551	hypothetical protein LOC100193008	-	4e-1	At1g78170	unknown protein	O.I.	H.G.	S.X.
0.63	81.1	0.97	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.
0.61	79.5	0.97	Zm.2967.1.A1_at	AW119983	-	-	1e+0	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.
0.61	79.5	0.97	Zm.5595.1.A1_at	CD442436	hypothetical protein LOC100278654	-	3e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.
0.61	79.5	0.98	Zm.5917.1.A1_a_at	BM337345	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.
0.60	77.8	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.
0.59	76.1	0.95	Zm.16769.1.A1_at	CF634379	Hypothetical protein LOC100191855	-	5e-5	At1g04510	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.59	76.1	0.95	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.10315.1.S1_at	AF461732.1	uncoupling protein	-	6e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.5388.1.S1_at	AW453245	hypothetical protein LOC100193632	-	6e-23	At3g09180	unknown protein	O.I.	H.G.	S.X.
0.53	69.1	0.95	Zm.2689.1.A1_at	BM350188	-	-	2e+0	At5g43830	unknown protein	O.I.	H.G.	S.X.
0.53	69.1	0.97	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.
0.52	67.3	0.94	Zm.199.1.S1_s_at	AB008464.1	sucrose transporter1	-	2e-2	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.
0.50	65.7	0.93	Zm.12712.1.S1_at	CA404551	-	-	1e+0	At3g26400	EIF4B1	O.I.	H.G.	S.X.
0.50	65.7	0.94	Zm.4893.1.A1_at	AW067307	hypothetical protein LOC100276864	-	2e-7	At5g11600	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.96	Zm.828.1.A1_at	AI734461	hypothetical protein LOC100277560	-	5e+0	At3g21371	unknown protein	O.I.	H.G.	S.X.
0.47	59.9	0.97	Zm.4462.1.A1_at	AI714968	-	-	1e+1	At4g00342	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.12819.1.S1_at	CF635615	3-isopropylmalate dehydratase small subunit 2	-	1e-1	At3g58990	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.
0.44	55.7	0.97	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.
0.44	55.7	0.98	Zm.19053.1.S1_at	CO523639	hypothetical protein LOC100193386	-	2e+0	Atmg01020	-	O.I.	H.G.	S.X.
0.44	55.7	0.91	Zm.11876.1.A1_at	BM381446	-	-	5e+0	At1g03700	-	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.18534.1.A1_at	CO522076	protein binding protein	-	2e+1	At5g42567	-	O.I.	H.G.	S.X.
0.43	52.8	0.96	Zm.18388.1.A1_at	CB604567	hypothetical protein LOC100273514	-	1e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.42	51.3	0.95	Zm.17772.1.S1_at	CK371641	-	-	6e-2	At4g28170	unknown protein	O.I.	H.G.	S.X.
0.42	51.3	0.96	Zm.18466.1.A1_at	CO532706	hypothetical protein LOC100279872	-	2e+0	At5g51050	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.42	51.3	0.94	Zm.3695.1.A1_at	BI674832	-	-	1e-5	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.
0.42	51.3	0.97	Zm.4667.1.A1_at	BG266366	hypothetical protein LOC100274574	-	4e-1	At1g32780	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.9792.1.A1_at	BM338998	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.
0.39	45.6	0.94	Zm.14711.1.A1_at	CF625292	-	-	2e-10	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.
0.38	44.2	0.93	Zm.1843.1.A1_at	AI857156	hypothetical protein LOC100280169	-	3e-3	At4g04460	aspartyl protease family protein	O.I.	H.G.	S.X.
0.38	44.2	0.94	Zm.34.4.A1_x_at	AI667842	-	-	9e-1	At4g32780	phosphoinositide binding	O.I.	H.G.	S.X.
0.37	42.3	0.96	Zm.54.1.S1_at	L25805.1	alpha-amylase	-	3e-3	At4g25000	AMY1 (ALPHA-AMYLASE-LIKE)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.13565.2.S1_a_at	AI665019	-	-	3e+0	At3g25240	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.96	Zm.16958.1.A1_a_at	AI665328	hypothetical protein LOC100193269	-	6e-4	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.
0.36	41.3	0.98	Zm.4483.1.A1_at	CF051385	-	-	4e-1	At3g27580	ATPK7	O.I.	H.G.	S.X.
0.36	41.3	0.98	Zm.15852.2.S1_a_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.15871.2.S1_at	AI668188	Hypothetical protein LOC100216742	-	8e-1	At2g04515	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	0.96	Zm.12968.1.S1_at	CO528187	pyruvate dehydrogenase E1 component subunit beta	-	3e-62	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.6441.1.S1_at	CF055688	hypothetical protein LOC100217051	-	2e-20	At5g06160	ATO (ATROPOS)	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.4043.1.S1_at	AW091252	-	-	3e-10	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.11984.1.A1_at	AY107185.1	PB1 domain containing protein	-	5e+0	At5g25830	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.32	33.4	0.91	Zm.9431.1.A1_at	BM337524	-	-	1e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.32	33.4	0.95	Zm.10082.1.A1_at	BM378776	hypothetical protein LOC100279529	-	3e-10	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.
0.31	31.6	0.92	Zm.1896.1.S1_at	AY313902.1	yabby15 protein	-	6e-11	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.5 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Zm.5220.1.S1_at
Gene name	hypothetical protein LOC100279470
Homology with Arabidopsis	Similar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0)
Module size	6 genes
NF	0.84
%ile	98.5

Co-expression analysis

Gene ID Zm.5220.1.S1_at Gene name hypothetical protein LOC100279470 Homology with ArabidopsisSimilar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0) Module size 6 genes NF 0.84 %ile 98.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.5220.1.S1_at

Gene name hypothetical protein LOC100279470
Homology with Arabidopsis Similar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0)

Module size 6 genes

NF 0.84

%ile 98.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera