Co-expression analysis

Gene ID	Zm.5220.1.S1_at
Gene name	hypothetical protein LOC100279470
Homology with Arabidopsis	Similar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0)
Module size	6 genes
NF	0.84
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1620800_at, orthologous to the query gene, Zm.5220.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	1620800_at	At5g36120	-	-	3e-1	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.49	69.3	1620984_at	At5g36120	-	-	4e+0	At1g44094	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1612087_at	At5g36120	-	-	2e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1608846_at	At5g36120	-	-	3e-9	At2g40800	-	O.I.	H.G.	S.X.	Please select
0.38	53.6	1617315_at	At5g36120	hypothetical protein LOC100261900	-	6e-26	At5g65930	ZWI (ZWICHEL)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1621160_at	At5g36120	-	-	2e-1	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1622881_x_at	At5g36120	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612421_at	At5g36120	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.35	48.5	1618109_at	At5g36120	-	-	2e-11	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1619124_at	At5g36120	-	-	1e+0	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615501_at	At5g36120	-	-	4e+0	At3g11660	NHL1	O.I.	H.G.	S.X.	Please select
0.31	41.3	1622240_x_at	At5g36120	-	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	1619679_at	At5g36120	-	-	1e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615179_at	At5g36120	-	-	1e+1	At3g10525	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1612900_at	At5g36120	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1608276_at	At5g36120	-	-	2e+0	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1620364_at	At5g36120	-	-	1e+0	At2g18690	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1622815_at	At5g36120	-	-	1e+0	At1g68935	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618926_at	At5g36120	-	-	6e-1	At5g22608	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612989_at	At5g36120	hypothetical protein LOC100266919	-	7e-8	At3g26900	shikimate kinase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1611218_at	At5g36120	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608405_at	At5g36120	hypothetical protein LOC100243295	-	4e+0	At5g34881	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1618609_s_at	At5g36120	hypothetical protein LOC100249094	-	1e+0	At4g28556	RIC7	O.I.	H.G.	S.X.	Please select
0.20	22.4	1606496_at	At5g36120	-	-	1e+0	At3g47410	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1619095_s_at	At5g36120	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1617652_s_at	At5g36120	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.14	14.4	1607490_at	At5g36120	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	1611574_at	At5g36120	hypothetical protein LOC100243229	-	1e-23	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1607450_at	At5g36120	hypothetical protein LOC100264463	-	1e+0	At5g11070	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1616756_at	At5g36120	-	-	3e-16	At3g66658	ALDH22a1 (Aldehyde Dehydrogenase 22a1)	O.I.	H.G.	S.X.	Please select
0.12	12.1	1620211_at	At5g36120	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.11	11.3	1616367_x_at	At5g36120	-	-	4e-10	At5g13030	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1608170_at	At5g36120	hypothetical protein LOC100248761	-	2e-24	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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