Co-expression analysis

Gene ID	Zm.5220.1.S1_at
Gene name	hypothetical protein LOC100279470
Homology with Arabidopsis	Similar to At5g36120: CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (HF=1e+0)
Module size	6 genes
NF	0.84
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.63192.2.S1_s_at, orthologous to the query gene, Zm.5220.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	GmaAffx.63192.2.S1_s_at	At5g36120	-	-	2e-5	At5g17990	TRP1 (tryptophan biosynthesis 1)	O.I.	H.G.	S.X.	Please select
0.64	83.4	Gma.2654.2.S1_a_at	At5g36120	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.76235.2.S1_at	At5g36120	-	-	9e-1	At3g11160	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.4917.2.S1_a_at	At5g36120	-	-	4e-6	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.70388.1.S1_at	At5g36120	-	-	4e+0	At2g47810	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.665.2.S1_a_at	At5g36120	-	-	4e+0	At5g45690	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.16537.2.S1_at	At5g36120	-	-	1e-49	At3g05350	aminopeptidase/ hydrolase	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.7497.2.S1_s_at	At5g36120	OAS-TL4 cysteine synthase	-	6e-21	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.28349.2.S1_at	At5g36120	-	-	5e-18	At4g33760	tRNA synthetase class II (D, K and N) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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