Co-expression analysis

Gene ID	Zm.52.1.A1_at
Gene name	root cap protein 1
Homology with Arabidopsis	Similar to At5g60520: late embryogenesis abundant protein-related / LEA protein-related (HF=2e+0)
Module size	6 genes
NF	0.61
%ile	81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.96	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.1855.1.A1_at	CO520028	-	-	5e-2	At2g03230	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.16065.2.A1_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.9577.1.A1_at	BM331837	shwachman-Bodian-Diamond syndrome protein	-	3e-6	At1g43860	transcription factor	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.1544.1.A1_a_at	BM340714	herbicide safener binding protein1	-	3e+0	At4g21190	emb1417 (embryo defective 1417)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.5081.1.S1_at	AW216015	hypothetical protein LOC100274512	-	5e-42	At1g10940	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage