Co-expression analysis

Gene ID	Zm.5166.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g19690: PLA2-BETA (PHOSPHOLIPASE A2-BETA) (HF=1e+0)
Module size	6 genes
NF	0.43
%ile	50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.98	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.14013.2.A1_x_at	BM338829	hypothetical protein LOC100193147 /// hypothetical protein LOC100275870 /// hypothetical protein LOC100276632 /// hypothetical protein LOC100278726	-	2e+1	At5g51860	MADS-box protein (AGL72)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.6475.2.A1_a_at	CO531953	hypothetical protein LOC100273857 /// PHD finger protein	-	3e-21	At1g14510	AL7 (ALFIN-LIKE 7)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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