Co-expression analysis

Gene ID Zm.515.1.S1_at
Gene name protoporphyrinogen IX oxidase
Homology with ArabidopsisSimilar to At5g14220: HEMG2 (HF=4e-3)
Module size 6 genes
NF 0.69
%ile 91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.515.1.S1_atAF273767.1protoporphyrinogen IX oxidase-4e-3At5g14220HEMG2O.I.H.G.S.X.
0.8094.00.97Zm.18083.1.A1_atBU079763--1e-17At2g38670PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)O.I.H.G.S.X.
0.7792.10.97Zm.19362.1.S1_atAY111241.1--1e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.7792.10.97Zm.9645.1.S1_atAY207047.1ZmMybst1-1e-8At3g16350myb family transcription factorO.I.H.G.S.X.
0.5571.60.97Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.1974.1.A1_atCF920129--2e+1At5g36100unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8696.30.95Zm.4600.1.A1_atBM078673auxin-inducible protein-2e-1At4g14870P-P-bond-hydrolysis-driven protein transmembrane transporterO.I.H.G.S.X.
0.6785.80.96Zm.9823.1.A1_atBM348998--4e-1At3g47990zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6785.80.96Zm.4930.1.A1_atAY111526.1--2e-9At2g27040AGO4 (ARGONAUTE 4)O.I.H.G.S.X.
0.5775.10.94Zm.3422.1.A1_a_atCO522674hypothetical protein LOC100191154 /// maize 20S proteasome alpha subunit-5e-26At5g35590PAA1 (PROTEASOME ALPHA SUBUNIT A 1)O.I.H.G.S.X.
0.5674.40.94Zm.18788.1.S1_atCO525699hypothetical protein LOC100191721-8e-1At4g21366ATP binding / protein tyrosine kinaseO.I.H.G.S.X.
0.5571.60.94Zm.878.1.S1_x_atAI85531060S ribosomal protein L35-6e-3At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.5571.60.96Zm.17520.1.A1_a_atCF633076--3e-2At1g29120unknown proteinO.I.H.G.S.X.
0.5369.10.96Zm.3726.1.A1_atAY105990.1hypothetical protein LOC100274504-2e-1At1g05850POM1 (POM-POM1)O.I.H.G.S.X.
0.5065.70.94Zm.11612.1.A1_atCF634224--3e-1At1g06135unknown proteinO.I.H.G.S.X.
0.4861.30.90ZmAffx.595.1.S1_atAI715023--5e+0At4g32342unknown proteinO.I.H.G.S.X.
0.4658.40.93Zm.1624.1.A1_atBM349679carbohydrate transporter/ sugar porter/ transporter-1e+0At2g03850late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.4455.70.93Zm.12382.1.S1_atBU097491--1e+0At1g06850AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)O.I.H.G.S.X.
0.4455.70.95Zm.15615.1.S1_atCO533411plant-specific domain TIGR01627 family protein-1e+1At5g15840CO (CONSTANS)O.I.H.G.S.X.
0.4455.70.95Zm.9706.1.A1_atBM336274--4e+0At1g70000DNA-binding family proteinO.I.H.G.S.X.
0.4455.70.96Zm.8870.1.A1_atBM331719acyl-CoA thioesterase/ catalytic/ hydrolase, acting on ester bonds-4e-1At4g15620integral membrane family proteinO.I.H.G.S.X.
0.4048.50.95Zm.9776.1.A1_atCF056431hypothetical protein LOC100193229-8e-8At1g79810TED3 (REVERSAL OF THE DET PHENOTYPE 3)O.I.H.G.S.X.
0.3641.30.94Zm.4513.1.A1_atCA405232--3e+0At2g41280M10O.I.H.G.S.X.
0.3641.30.93Zm.9826.1.A1_atBM332738--1e+0At3g28680prolylcarboxypeptidase-relatedO.I.H.G.S.X.
0.3336.00.93Zm.9291.1.S1_atAY103885.1hypothetical protein LOC100272653-3e+0At3g54020phosphatidic acid phosphatase-related / PAP2-relatedO.I.H.G.S.X.
0.3336.00.93Zm.18328.1.S1_atCF010744cyclin-like F-box-1e+0At4g16750DRE-binding transcription factor, putativeO.I.H.G.S.X.
0.3233.40.93Zm.17989.1.A1_atCF630109--2e+0At5g64130-O.I.H.G.S.X.
0.3131.60.94Zm.788.2.A1_atCD441048hypothetical protein LOC100194151-1e-73At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3131.60.97Zm.18257.1.S1_atCN845413--2e+0At2g26310chalcone isomeraseO.I.H.G.S.X.
0.3029.80.97Zm.18431.1.S1_atCO517527--4e-28At3g21690MATE efflux family proteinO.I.H.G.S.X.
0.2724.60.93Zm.13134.1.S1_atCA404787--2e+0At3g5374060S ribosomal protein L36 (RPL36B)O.I.H.G.S.X.
0.2724.60.96Zm.1104.1.A1_atBE056041Zea mays MADS8-4e-2At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.2622.70.93Zm.7004.1.A1_atCD447791--7e-10At2g33800ribosomal protein S5 family proteinO.I.H.G.S.X.
0.2521.30.93Zm.3304.1.S1_atCF007162hypothetical protein LOC100191987-4e-3At5g10330HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.799.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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