Co-expression analysis

Gene ID Zm.515.1.S1_at
Gene name protoporphyrinogen IX oxidase
Homology with ArabidopsisSimilar to At5g14220: HEMG2 (HF=4e-3)
Module size 6 genes
NF 0.69
%ile 91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.515.1.S1_atAF273767.1protoporphyrinogen IX oxidase-4e-3At5g14220HEMG2O.I.H.G.S.X.
0.8094.00.97Zm.18083.1.A1_atBU079763--1e-17At2g38670PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)O.I.H.G.S.X.
0.7792.10.97Zm.19362.1.S1_atAY111241.1--1e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.7792.10.97Zm.9645.1.S1_atAY207047.1ZmMybst1-1e-8At3g16350myb family transcription factorO.I.H.G.S.X.
0.5571.60.97Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.1974.1.A1_atCF920129--2e+1At5g36100unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.799.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8487.1.S1_at, orthologous to the query gene, Zm.515.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.1Gma.8487.1.S1_atAt5g14220protoporphyrinogen IX oxidase-7e-20At5g14220HEMG2O.I.H.G.S.X.
0.5576.3GmaAffx.8927.1.S1_atAt5g14220--5e-32At4g39100SHL1 (short life)O.I.H.G.S.X.
0.4968.3GmaAffx.7156.1.A1_s_atAt5g14220--2e-5At4g36860zinc ion bindingO.I.H.G.S.X.
0.4867.7GmaAffx.44003.1.S1_atAt5g14220--1e+0At5g22280unknown proteinO.I.H.G.S.X.
0.4463.3GmaAffx.86047.2.S1_atAt5g14220--2e-12At3g55830EPC1 (ECTOPICALLY PARTING CELLS)O.I.H.G.S.X.
0.4463.3Gma.6104.1.S1_x_atAt5g14220--8e-3At3g48440zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.4360.6Gma.10642.1.S1_atAt5g14220--4e-48At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.4360.6Gma.8366.1.S1_a_atAt5g14220--2e-12At3g17850protein kinase, putativeO.I.H.G.S.X.
0.4259.3Gma.5720.1.S1_s_atAt5g14220--4e-5At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.4158.1Gma.1782.2.S1_a_atAt5g14220--5e-7At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.4158.1Gma.950.1.A1_atAt5g14220--4e+0At5g03550-O.I.H.G.S.X.
0.4057.1Gma.10823.1.S1_atAt5g14220--3e-32At1g65220eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.S.X.
0.3954.5Gma.2668.2.A1_atAt5g14220--4e-6At5g42520ATBPC6O.I.H.G.S.X.
0.3548.6Gma.1265.1.S1_a_atAt5g14220--1e-10At5g19860unknown proteinO.I.H.G.S.X.
0.3548.6Gma.11129.1.S1_x_atAt5g14220--6e-119At3g05840ATSK12O.I.H.G.S.X.
0.3447.2Gma.2314.1.S1_atAt5g14220--1e-33At4g24740AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)O.I.H.G.S.X.
0.3346.1Gma.1353.2.S1_atAt5g14220--1e-47At4g26100CK1 (CASEIN KINASE 1)O.I.H.G.S.X.
0.3243.7Gma.4225.1.S1_a_atAt5g14220--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.3243.7Gma.11129.2.S1_x_atAt5g14220--8e-39At3g05840ATSK12O.I.H.G.S.X.
0.3040.4Gma.1066.1.S1_atAt5g14220--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.
0.2735.7Gma.4420.1.S1_s_atAt5g14220--5e-20At5g38470DNA repair protein RAD23, putativeO.I.H.G.S.X.
0.2735.7Gma.8323.1.S1_atAt5g14220--1e-26At5g19680leucine-rich repeat family proteinO.I.H.G.S.X.
0.2633.9Gma.2787.1.S1_s_atAt5g14220--6e-17At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.2430.9Gma.3839.1.S1_atAt5g14220--2e-69At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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