Co-expression analysis

Gene ID Zm.5146.2.S1_at
Gene name Hypothetical protein LOC100194286
Homology with ArabidopsisSimilar to At1g02560: CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) (HF=6e-22)
Module size 6 genes
NF 0.24
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.85Zm.5146.2.S1_atAI586869Hypothetical protein LOC100194286-6e-22At1g02560CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)O.I.H.G.S.X.
0.7188.20.87Zm.16065.2.A1_s_atBM080549Histone H2B.3-8e-15At1g07790HTB1O.I.H.G.S.X.
0.4658.40.86Zm.13558.1.A1_atBQ163517--1e-3At1g26340CB5-A (CYTOCHROME B5 ISOFORM A)O.I.H.G.S.X.
0.4048.50.88Zm.5801.1.A1_atAY111239.1hypothetical protein LOC100275802-6e-3At5g12470unknown proteinO.I.H.G.S.X.
0.2115.50.85Zm.3078.1.S1_atAW453293hypothetical protein LOC100192566-2e+0At4g28181unknown proteinO.I.H.G.S.X.
0.051.90.86Zm.2265.1.S1_atAW330882--3e+0At3g49720unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320473protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0308100, orthologous to the query gene, Zm.5146.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5068.0Os03g0308100At1g02560-Peptidase S14, ClpP family protein5e-60At1g02560CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)O.I.H.G.S.X.
0.7189.6Os01g0507900At1g02560-NClpP3 (ATP-dependent Clp protease proteolyticsubunit ClpP3)3e+0At4g35820oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6583.8Os02g0833400At1g02560-Conserved hypothetical protein9e-16At1g63610unknown proteinO.I.H.G.S.X.
0.6382.7Os07g0568500At1g02560-Conserved hypothetical protein7e-1At2g42380bZIP transcription factor family proteinO.I.H.G.S.X.
0.6181.2Os07g0485400At1g02560-Asparaginyl-tRNA synthetase,chloroplast/mitochondrial precursor (EC 6.1.1.22)(Asparagine--tRNA ligase) (AsnRS)1e-25At4g17300NS1O.I.H.G.S.X.
0.6079.7Os03g0209600At1g02560-MEtRS (EC 6.1.1.10)3e-10At3g55400OVA1 (OVULE ABORTION 1)O.I.H.G.S.X.
0.5978.0Os12g0485000At1g02560-Peptidase M22, glycoprotease domain containingprotein6e-5At2g45270glycoprotease M22 family proteinO.I.H.G.S.X.
0.5978.0Os03g0651000At1g02560-Glu-tRNAGln amidotransferase, C subunit familyprotein4e-1At2g40650pre-mRNA splicing factor PRP38 family proteinO.I.H.G.S.X.
0.5573.7Os11g0153600At1g02560-Signal peptide binding (SRP54) M-domain containingprotein1e-22At5g03940CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)O.I.H.G.S.X.
0.5471.9Os02g0623500At1g02560-Lysyl-tRNA synthetase, class-2 family protein4e-28At3g13490OVA5 (OVULE ABORTION 5)O.I.H.G.S.X.
0.4964.4Os02g0754700At1g02560--2e-17At3g46100ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.4762.3Os10g0580800At1g02560-NClpP4 (Fragment)1e-5At5g45390CLPP4 (CLP PROTEASE P4)O.I.H.G.S.X.
0.4051.1Os11g0580800At1g02560-Bacterial sec-independent translocation proteinmttA/Hcf106 family protein6e-23At5g52440HCF106O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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