Co-expression analysis

Gene ID Zm.5146.2.S1_at
Gene name Hypothetical protein LOC100194286
Homology with ArabidopsisSimilar to At1g02560: CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) (HF=6e-22)
Module size 6 genes
NF 0.24
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.85Zm.5146.2.S1_atAI586869Hypothetical protein LOC100194286-6e-22At1g02560CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)O.I.H.G.S.X.
0.7188.20.87Zm.16065.2.A1_s_atBM080549Histone H2B.3-8e-15At1g07790HTB1O.I.H.G.S.X.
0.4658.40.86Zm.13558.1.A1_atBQ163517--1e-3At1g26340CB5-A (CYTOCHROME B5 ISOFORM A)O.I.H.G.S.X.
0.4048.50.88Zm.5801.1.A1_atAY111239.1hypothetical protein LOC100275802-6e-3At5g12470unknown proteinO.I.H.G.S.X.
0.2115.50.85Zm.3078.1.S1_atAW453293hypothetical protein LOC100192566-2e+0At4g28181unknown proteinO.I.H.G.S.X.
0.051.90.86Zm.2265.1.S1_atAW330882--3e+0At3g49720unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320473protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig5003_at, orthologous to the query gene, Zm.5146.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1Contig5003_atAt1g02560--5e-54At1g02560CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)O.I.H.G.S.X.
0.6784.7Contig6615_atAt1g02560--2e+0At4g10610CID12O.I.H.G.S.X.
0.6077.3Contig12575_atAt1g02560--6e-1At1g70580AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.5066.9Contig11994_atAt1g02560--8e-1At4g11020unknown proteinO.I.H.G.S.X.
0.4661.0HV_CEb0023O04r2_atAt1g02560--1e+0At3g19390cysteine proteinase, putative / thiol protease, putativeO.I.H.G.S.X.
0.4356.4Contig11869_atAt1g02560--5e-1At5g44568unknown proteinO.I.H.G.S.X.
0.3342.6Contig23800_atAt1g02560--5e+0At2g20820unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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