Co-expression analysis

Gene ID	Zm.5141.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g69960: PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) (HF=2e-60)
Module size	24 genes
NF	0.58
%ile	77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	0.98	Zm.5141.1.A1_at	CF628146	-	-	2e-60	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.6984.8.A1_a_at	AI770763	Hypothetical protein LOC100193571	-	4e+0	At5g28615	-	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.98	Zm.15846.1.A1_s_at	AA979796	-	-	1e-4	At1g52360	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.98	Zm.6560.1.S1_a_at	Z29518.1	1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 /// phospholipid synthesis1	-	8e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.12837.1.A1_at	AY106006.1	-	-	2e+0	At1g72170	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.15845.1.S1_at	CF244242	hypothetical protein LOC100216966	-	5e+0	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.3379.1.A1_at	BM075631	hypothetical protein LOC100272941	-	1e+0	At3g59250	F-box family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.6259.1.A1_at	AI691171	transferase, transferring glycosyl groups	-	2e+0	At4g23490	fringe-related protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	Zm.16848.2.A1_at	CD437503	hypothetical protein LOC100193258	-	1e-7	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.16537.1.S1_at	AY103617.1	40S ribosomal protein SA	-	4e-70	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.3044.2.S1_a_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.3044.2.A1_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.13423.1.A1_at	AI738122	-	-	1e+0	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.6116.1.A1_at	CK347339	-	-	9e-16	At3g02320	RNA binding / tRNA (guanine-N2-)-methyltransferase	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.4024.1.A1_at	AY105692.1	-	-	1e-3	At2g35170	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.8581.1.A1_at	BM267381	hypothetical protein LOC100216584	-	4e-2	At3g46030	HTB11	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.16846.1.A1_at	AY103657.1	seed specific protein Bn15D1B	-	3e+1	At5g07110	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.16845.1.A1_at	BM079430	-	-	2e-2	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.6877.1.A1_at	AW216051	hypothetical protein LOC100193287	-	1e-11	At5g61460	MIM (hypersensitive to MMS, irradiation and MMC)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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