Co-expression analysis

Gene ID	Zm.5093.1.A1_at
Gene name	GAGA-binding protein
Homology with Arabidopsis	Similar to At1g14685: BPC2 (BASIC PENTACYSTEINE 2) (HF=4e-4)
Module size	17 genes
NF	0.52
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.5093.1.A1_at	AI600800	GAGA-binding protein	-	4e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.98	Zm.18125.1.S1_at	CN844337	-	-	4e-1	At3g47380	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.10538.1.A1_at	BQ538177	-	-	6e-7	At3g59830	ankyrin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.17660.1.S1_at	AY106360.1	-	-	4e-1	At4g39720	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.2997.1.S1_at	CD983066	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.4271.4.A1_at	BG316519	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.12433.1.S1_s_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.10287.1.S1_at	BM736731	-	-	1e+0	At2g45250	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.12736.2.A1_at	AI881252	-	-	5e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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