Co-expression analysis

Gene ID Zm.509.1.S1_at
Gene name calcium pump1
Homology with ArabidopsisSimilar to At1g07810: ECA1 (ER-TYPE CA2+-ATPASE 1) (HF=3e-11)
Module size 7 genes
NF 0.81
%ile 97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.95Zm.509.1.S1_atAF096871.1calcium pump1-3e-11At1g07810ECA1 (ER-TYPE CA2+-ATPASE 1)O.I.H.G.S.X.
0.9299.20.95Zm.17350.1.A1_atCO524170--2e+1Atcg00300-O.I.H.G.S.X.
0.9299.20.96Zm.12134.2.S1_atAY106643.1hypothetical protein LOC100193898-1e+0At4g08691unknown proteinO.I.H.G.S.X.
0.8696.30.94Zm.17685.1.A1_atAW126592--6e-1At1g55010PDF1.5 (plant defensin 1.5)O.I.H.G.S.X.
0.8696.30.95Zm.16365.1.S1_atCF625542hypothetical protein LOC100278838-5e+0At3g44440unknown proteinO.I.H.G.S.X.
0.5976.10.95Zm.16142.1.S1_atCF243882hypothetical protein LOC100194402-9e-1At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.
0.5775.10.95Zm.1737.2.S1_atAW355997--8e-1At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.399.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.198.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage