Co-expression analysis

Gene ID	Zm.5064.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29880: glycyl-tRNA synthetase / glycine--tRNA ligase (HF=2e-24)
Module size	6 genes
NF	0.32
%ile	30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.5064.1.S1_at	CA399210	-	-	2e-24	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	ZmAffx.165.1.S1_at	AI668200	-	-	3e+0	At3g28760	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.39.1.S1_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.3783.1.S1_at	AW331211	Betaine aldehyde dehydrogenase	-	6e-4	At3g48170	ALDH10A9	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	92.6	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.4	92.2	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.4	92.2	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.1	90.8	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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