Co-expression analysis

Gene ID	Zm.5058.1.A1_at
Gene name	hypothetical protein LOC100217195
Homology with Arabidopsis	Similar to At4g33960: unknown protein (HF=4e+0)
Module size	15 genes
NF	0.48
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	82.1	0.97	Zm.5058.1.A1_at	BG266535	hypothetical protein LOC100217195	-	4e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.1519.1.S1_at	AF033263.1	blue-light receptor phototropin 1	-	5e-16	At3g45780	PHOT1 (PHOTOTROPIN 1)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.1704.1.S1_at	BM380131	hypothetical protein LOC100217212	-	1e+0	At1g78190	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.12977.1.S1_a_at	AY105605.1	hypothetical protein LOC100193319	-	1e-4	At1g15370	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.6453.1.S1_at	AY106427.1	-	-	3e-1	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.16475.3.S1_at	CF019135	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.19120.1.A1_at	CO523709	hypothetical protein LOC100272621	-	4e-7	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.15194.1.A1_at	BM334114	-	-	4e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.494.2.S1_at	BE056113	Prohibitin1	-	3e+0	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.8138.1.A1_at	BM336608	tubby protein	-	1e-3	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.2811.1.A1_at	CA402433	hypothetical protein LOC100279769	-	1e+0	At4g05100	AtMYB74 (myb domain protein 74)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.7644.2.S1_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.15975.1.A1_at	AY109347.1	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.12674.1.A1_at	CN845329	-	-	5e-5	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage