CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5017.1.S1_at

Gene name dynamin-related protein 1C
Homology with Arabidopsis Similar to At1g14830: ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) (HF=5e-46)

Module size 7 genes

NF 0.67

%ile 89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 55.7 0.93 Zm.5017.1.S1_at BM072931 dynamin-related protein 1C - 5e-46 At1g14830 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) O.I. H.G. S.X.
0.73 89.9 0.95 Zm.6381.1.A1_at CO534945 hypothetical protein LOC100273528 - 2e+0 At2g42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) O.I. H.G. S.X.
0.73 89.9 0.95 Zm.1783.1.S1_at AY109631.1 protein binding protein - 1e+1 At5g24860 FPF1 (FLOWERING PROMOTING FACTOR 1) O.I. H.G. S.X.
0.71 88.2 0.92 Zm.16513.4.S1_at AY104628.1 actin-7 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.71 88.2 0.94 Zm.4336.1.S1_at CA403908 hypothetical protein LOC100274309 - 4e+0 At5g38580 - O.I. H.G. S.X.
0.67 85.8 0.95 Zm.6874.2.S1_at CF637577 - - 3e-3 At2g45430 DNA-binding protein-related O.I. H.G. S.X.
0.61 79.5 0.95 Zm.6872.1.A1_at AI065521 - - 2e+0 At1g27920 MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.93	Zm.6394.1.A1_at	BM378641	hypothetical protein LOC100192557	-	3e-2	At1g52150	ATHB-15	O.I.	H.G.	S.X.
0.67	85.8	0.92	Zm.10621.1.A1_at	CF245020	carboxyl-terminal proteinase	-	2e+1	At5g18290	SIP1	O.I.	H.G.	S.X.
0.46	58.4	0.92	Zm.10050.1.A1_at	BM378683	Hypothetical protein LOC100216574	-	1e+0	At5g59305	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.92	Zm.685.1.S1_at	AY029317.1	barley mlo defense gene homolog6	-	4e-3	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	O.I.	H.G.	S.X.
0.41	49.7	0.91	Zm.6419.1.A1_at	CF635415	xyloglucan endotransglucosylase/hydrolase	-	3e-6	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.
0.40	48.5	0.92	Zm.6505.1.A1_at	AI692111	SAM domain family protein	-	2e-1	At5g52220	-	O.I.	H.G.	S.X.
0.37	42.3	0.90	Zm.13367.1.S1_x_at	Y17332.1	proline-rich protein	-	5e-2	At1g12610	DDF1 (DWARF AND DELAYED FLOWERING 1)	O.I.	H.G.	S.X.
0.36	41.3	0.93	Zm.12338.1.S1_at	BQ744947	hypothetical protein LOC100276807	-	5e+0	At5g40451	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.94	Zm.6503.1.A1_at	CK370921	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.36	41.3	0.93	Zm.12612.1.A1_at	BU050513	-	-	6e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	O.I.	H.G.	S.X.
0.35	38.9	0.93	Zm.8573.1.S1_a_at	BU051013	-	-	2e+1	At5g01640	PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)	O.I.	H.G.	S.X.
0.31	31.6	0.91	Zm.6442.1.S1_at	CK370898	hypothetical protein LOC100279807	-	2e-32	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.
0.31	31.6	0.92	Zm.17269.1.S1_at	CF009913	small nuclear ribonucleoprotein Sm D2	-	3e-44	At2g47640	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	O.I.	H.G.	S.X.
0.31	31.6	0.92	Zm.16639.1.A1_at	CF635693	Hypothetical protein LOC100191827	-	2e-3	At4g10840	kinesin light chain-related	O.I.	H.G.	S.X.
0.31	31.6	0.94	Zm.4476.1.S1_at	CN844697	hypothetical protein LOC100279771	-	4e+0	At3g20590	non-race specific disease resistance protein, putative	O.I.	H.G.	S.X.
0.29	28.1	0.90	Zm.2962.1.S1_at	CF045165	hypothetical protein LOC100272424	-	7e-18	At4g27720	-	O.I.	H.G.	S.X.
0.26	22.7	0.86	Zm.5463.1.A1_at	AY104268.1	prolyl-tRNA synthetase	-	4e-80	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM253252 ZM_24h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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