Co-expression analysis

Gene ID Zm.4881.1.A1_at
Gene name High mobility group protein3
Homology with ArabidopsisSimilar to At2g19385: zinc ion binding (HF=6e-1)
Module size 6 genes
NF 0.34
%ile 35.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.92Zm.4881.1.A1_atCA404148High mobility group protein3-6e-1At2g19385zinc ion bindingO.I.H.G.S.X.
0.6785.80.91Zm.4880.1.S1_atCF627543hypothetical protein LOC100276737-2e+0At4g13110BSD domain-containing proteinO.I.H.G.S.X.
0.6381.10.91Zm.2536.1.A1_atCK347523hypothetical protein LOC100216682-6e+0At5g42960unknown proteinO.I.H.G.S.X.
0.5775.10.91Zm.6810.3.A1_a_atCF627455nudix type motif 22-1e+0At2g16490XH domain-containing proteinO.I.H.G.S.X.
0.1912.80.94ZmAffx.1085.1.S1_atAW018111--3e+0At1g67035unknown proteinO.I.H.G.S.X.
0.104.60.93Zm.3284.2.A1_a_atCF631443--5e+0At5g45750AtRABA1c (Arabidopsis Rab GTPase homolog A1c)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.88ZmAffx.540.1.S1_atAI711844--2e-1At4g25400basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5065.70.94Zm.2537.1.A1_atBG841754hypothetical protein LOC100191813-3e-1At2g25190unknown proteinO.I.H.G.S.X.
0.4048.50.83Zm.5018.2.A1_a_atAY112461.1hypothetical protein LOC100194303-4e-1At5g49350unknown proteinO.I.H.G.S.X.
0.4048.50.88Zm.6974.1.A1_a_atBM078279hypothetical protein LOC100276561-8e-1At5g57887unknown proteinO.I.H.G.S.X.
0.3336.00.87Zm.18998.1.S1_atBF727820esterase-8e-1At4g00895ATP synthase delta chain-relatedO.I.H.G.S.X.
0.3233.40.95Zm.3219.3.A1_atAY109877.1--2e-119At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.3131.60.75Zm.7016.2.A1_atCF626808--5e+0At1g54500rubredoxin family proteinO.I.H.G.S.X.
0.3029.80.85Zm.4072.1.S1_atAI834416phosphoribosylanthranilate transferase-2e-6At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.2419.80.84Zm.16341.1.S1_atCF349042hypothetical protein LOC100278884-1e+0At4g32030unknown proteinO.I.H.G.S.X.
0.2216.90.94Zm.19253.1.S1_atCO526011ramosa3-1e-3At1g35910trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.398.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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