Co-expression analysis

Gene ID	Zm.4881.1.A1_at
Gene name	High mobility group protein3
Homology with Arabidopsis	Similar to At2g19385: zinc ion binding (HF=6e-1)
Module size	6 genes
NF	0.34
%ile	35.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.92	Zm.4881.1.A1_at	CA404148	High mobility group protein3	-	6e-1	At2g19385	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.91	Zm.4880.1.S1_at	CF627543	hypothetical protein LOC100276737	-	2e+0	At4g13110	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.91	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.91	Zm.6810.3.A1_a_at	CF627455	nudix type motif 22	-	1e+0	At2g16490	XH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.93	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112692.2.S1_at, orthologous to the query gene, Zm.4881.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.112692.2.S1_at	At2g19385	-	-	1e+0	At1g35537	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.4639.1.S1_at	At2g19385	-	-	2e+0	At1g54780	thylakoid lumen 18.3 kDa protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.92431.1.A1_at	At2g19385	-	-	4e+0	At1g33265	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.28553.13.S1_at	At2g19385	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.5312.3.S1_x_at	At2g19385	-	-	4e+0	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.129161.1.S1_at	At2g19385	Serine/threonine protein kinase 1	-	8e-22	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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