Co-expression analysis

Gene ID	Zm.4881.1.A1_at
Gene name	High mobility group protein3
Homology with Arabidopsis	Similar to At2g19385: zinc ion binding (HF=6e-1)
Module size	6 genes
NF	0.34
%ile	35.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.92	Zm.4881.1.A1_at	CA404148	High mobility group protein3	-	6e-1	At2g19385	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.91	Zm.4880.1.S1_at	CF627543	hypothetical protein LOC100276737	-	2e+0	At4g13110	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.91	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.91	Zm.6810.3.A1_a_at	CF627455	nudix type motif 22	-	1e+0	At2g16490	XH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.93	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os02g0670400, orthologous to the query gene, Zm.4881.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	91.1	Os02g0670400	At2g19385	-	-	4e-2	At4g11300	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os04g0681600	At2g19385	-	Protein of unknown function DUF580 family protein	4e-25	At3g15380	choline transporter-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os10g0563300	At2g19385	-	WD40-like domain containing protein	1e-46	At5g07590	WD-40 repeat protein family	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os03g0151600	At2g19385	-	GCN5-related N-acetyltransferase domain containingprotein	8e+0	At1g75390	AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os04g0455600	At2g19385	-	Conserved hypothetical protein	7e-7	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os01g0897000	At2g19385	-	Protein kinase domain containing protein	1e-33	At3g54180	CDKB1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage