Co-expression analysis

Gene ID	Zm.4853.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g45070: SEC61 BETA (HF=2e-1)
Module size	6 genes
NF	0.62
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	Zm.4853.1.S1_at	CD439703	-	-	2e-1	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	Zm.4194.1.A1_at	AI861230	hypothetical protein LOC100276018	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.23	18.6	1.00	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.4	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.4	97.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.6	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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