Co-expression analysis

Gene ID	Zm.4838.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g01720: ATAF1 (HF=1e-5)
Module size	12 genes
NF	0.43
%ile	51.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.79	Zm.4838.1.A1_at	AI649483	-	-	1e-5	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.89	Zm.19057.1.A1_at	CO525209	-	-	4e-2	At5g05280	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.89	ZmAffx.185.1.A1_at	AI668356	-	-	1e+1	At5g58220	TTL (Transthyretin-Like protein)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	ZmAffx.1509.1.S1_at	11990232-51	-	-	2e-106	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	RPTR-Zm-X17220-1_at	RPTR-Zm-X17220-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	RPTR-Zm-J01636-1_at	RPTR-Zm-J01636-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	RPTR-Zm-J01347-4_at	RPTR-Zm-J01347-4	-	-			-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.93	Zm.15903.2.A1_at	BM266872	-	-	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.87	ZmAffx.169.1.A1_at	AI664986	-	-	2e-1	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.86	Zm.17328.1.A1_at	CF629185	hypothetical protein LOC100192114	-	5e+0	Atcg00560	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.90	Zm.4351.1.A1_at	AI861482	hypothetical protein LOC100191604	-	2e-1	At1g10040	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.89	Zm.5688.1.A1_at	AY105372.1	-	-	6e-14	At2g19450	TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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