Co-expression analysis

Gene ID	Zm.4820.1.A1_x_at
Gene name	hypothetical protein LOC100192684
Homology with Arabidopsis	Similar to At5g53300: UBC10 (ubiquitin-conjugating enzyme 10) (HF=1e-35)
Module size	26 genes
NF	0.46
%ile	56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.4820.1.A1_x_at	BG319643	hypothetical protein LOC100192684	-	1e-35	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	Zm.12955.1.A1_at	CA402356	-	-	6e-1	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.154.1.S1_at	BM339072	actin-1	-	3e-108	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.5959.1.A1_at	AI665952	-	-	1e-6	At4g30720	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.554.1.A1_at	CF630610	glutathione transferase28	-	1e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.5646.2.A1_x_at	AW257823	hypothetical protein LOC100191650	-	3e-41	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.3743.1.S1_at	BG841570	-	-	2e-1	At1g47900	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.12527.1.A1_at	CF014227	hypothetical protein LOC100192918	-	2e-5	At5g18640	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.14125.1.A1_at	CO533246	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.13580.1.A1_at	AI677218	lipase	-	4e-1	At4g14270	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.13265.1.S1_at	AY110086.1	-	-	1e-3	At1g12240	ATBETAFRUCT4	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.10174.1.S1_at	AY111125.1	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.11624.1.A1_at	CF637935	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.2573.1.A1_at	CF626061	hypothetical protein LOC100276087	-	1e+1	At5g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.10210.1.A1_at	CF627510	-	-	2e-2	At2g47460	MYB12 (MYB DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.13835.1.S1_at	CO518326	hypothetical protein LOC100193923	-	2e+0	At1g27640	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.5372.1.S1_at	AW000380	secondary cell wall-related glycosyltransferase family 8	-	5e-15	At3g18660	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.534.1.A1_x_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.17271.8.A1_at	BM340602	40S ribosomal protein S10	-	3e-11	At5g52650	40S ribosomal protein S10 (RPS10C)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.14428.1.S1_at	AY106109.1	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.17593.1.S1_at	CK371561	hypothetical protein LOC100277355	-	2e-1	At2g38620	CDKB1	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.6591.1.A1_at	CB351302	-	-	3e+0	At3g60910	catalytic/ methyltransferase	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.8729.1.A1_at	BM339706	hypothetical protein LOC100277693	-	2e-2	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.6876.1.S1_at	AI065530	hypothetical protein LOC100193891	-	1e-7	At1g30820	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.16836.1.A1_at	CF629974	hypothetical protein LOC100193667	-	7e-2	At1g80400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.6560.1.S1_at	Z29518.1	phospholipid synthesis1	-	8e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage