Co-expression analysis

Gene ID	Zm.4745.1.A1_at
Gene name	hypothetical protein LOC100194119
Homology with Arabidopsis	Similar to At3g55350: unknown protein (HF=1e-3)
Module size	9 genes
NF	0.58
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.4745.1.A1_at	AI739741	hypothetical protein LOC100194119	-	1e-3	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.6630.1.A1_a_at	CA402660	hypothetical protein LOC100193888 /// hypothetical protein LOC100194042 /// hypothetical protein LOC100276114	-	1e-22	At1g80490	TPR1 (TOPLESS-RELATED 1)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.96	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.2870.1.A1_at	AW076473	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.6	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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