Co-expression analysis

Gene ID	Zm.4702.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g36180: leucine-rich repeat family protein (HF=9e-3)
Module size	13 genes
NF	0.45
%ile	54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.95	Zm.4702.1.A1_at	CA401021	-	-	9e-3	At4g36180	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.3098.1.A1_at	BM379893	caffeoyl-CoA O-methyltransferase 1	-	7e-10	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.16236.1.S1_at	CF636722	Hypothetical protein LOC100191422	-	2e+0	At4g29570	cytidine deaminase, putative / cytidine aminohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.6398.1.A1_at	CA398579	transposon protein Mutator sub-class	-	3e+0	At2g43660	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.6671.1.S1_a_at	BM379927	germin-like protein 1	-	7e+0	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.95	Zm.4524.1.A1_at	CD971358	-	-	1e+1	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.14807.1.S1_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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