Co-expression analysis

Gene ID	Zm.4668.1.S1_at
Gene name	hypothetical protein LOC100275065
Homology with Arabidopsis	Similar to At3g19630: radical SAM domain-containing protein (HF=1e+1)
Module size	47 genes
NF	0.38
%ile	41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.94	Zm.4668.1.S1_at	BE575054	hypothetical protein LOC100275065	-	1e+1	At3g19630	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16315.3.S1_x_at	AI734741	plasma membrane integral protein ZmPIP1-3	-	9e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.19152.1.S1_at	CO531785	-	-	5e-8	At4g09570	CPK4	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.3735.1.A1_at	AY107167.1	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.1940.1.S1_at	AW507032	-	-	5e-1	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	ZmAffx.716.1.A1_at	AI739804	-	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.5481.2.A1_at	AW017536	dek protein	-	1e-3	At3g48710	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.439.1.A1_at	AF058708.1	RNA polymerase sigma factor 1	-	3e+0	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.2264.1.A1_at	CF052773	-	-	5e+0	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.10900.1.A1_at	BM332136	-	-	1e-3	At1g20830	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.1574.1.S1_at	AY106519.1	-	-	6e-20	At2g24320	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	ZmAffx.1160.1.A1_at	AW438281	-	-	1e+1	At1g24060	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.17849.1.A1_at	AY110409.1	Hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	ZmAffx.889.1.A1_at	AI770841	-	-	8e-7	At2g40650	pre-mRNA splicing factor PRP38 family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.328.1.S1_at	U89496.1	liguleless1	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	ZmAffx.968.1.S1_at	AI833843	-	-	2e+0	At5g67110	ALC (ALCATRAZ)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.10652.1.S1_at	CN844569	hypothetical protein LOC100191856	-	4e-2	At1g23040	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.12930.1.S1_at	CA403471	hypothetical protein LOC100191377	-	3e-3	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.19138.1.S1_at	CO525589	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5985.3.S1_at	CF041948	-	-	4e-28	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.18338.1.A1_at	BM074037	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.12991.1.A1_at	CA402944	-	-	8e-2	At3g28230	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.14293.1.S1_at	AY107455.1	hypothetical protein LOC100191275	-	9e+0	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.10112.1.A1_at	BM268000	-	-	1e+0	At5g23810	AAP7	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.11547.1.S1_at	CA827895	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.9267.1.A1_at	BM267708	hypothetical protein AY107012 /// UPF0497 membrane protein 7	-	2e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.13088.1.A1_at	CA404275	-	-	9e-1	At3g29720	transferase-related	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.4257.1.S1_at	AW076388	respiratory burst oxidase protein A	-	5e-12	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.9532.1.A1_at	CF649570	hypothetical protein LOC100273362	-	2e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.5360.1.A1_at	AI621418	hypothetical protein LOC100273529	-	1e+0	At1g08830	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.4187.1.A1_at	AY105088.1	-	-	5e-1	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.3621.1.A1_at	AW438135	genetic modifier	-	1e-10	At4g11570	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage