Co-expression analysis

Gene ID	Zm.4664.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g65070: MAF4 (MADS AFFECTING FLOWERING 4) (HF=4e+0)
Module size	6 genes
NF	0.65
%ile	86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.4664.3.S1_x_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.4666.1.A1_at	CK368897	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.5810.1.A1_at	BM380578	pop3 peptide	-	5e-4	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.1973.1.S1_at	AY108179.1	hypothetical protein LOC100217077	-	5e-5	At1g12680	PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4406.2.A1_at	AI881215	-	-	8e-4	At1g34790	TT1 (transparent testa 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.3136.1.A1_at	CF625170	hypothetical protein LOC100192461	-	9e-66	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.9	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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