Co-expression analysis

Gene ID	Zm.4627.1.S1_a_at
Gene name	rolled leaf1 /// rolled leaf 2
Homology with Arabidopsis	Similar to At5g60690: REV (REVOLUTA) (HF=1e-22)
Module size	27 genes
NF	0.28
%ile	24.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	0.94	Zm.4627.1.S1_a_at	AY501430.1	rolled leaf1 /// rolled leaf 2	-	1e-22	At5g60690	REV (REVOLUTA)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.13583.1.S1_at	AY108161.1	-	-	5e-1	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.13865.1.S1_at	AF521880.1	R2R3 Myb transcription factor MYB-IF35	-	1e-5	At5g61420	MYB28 (myb domain protein 28)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.10429.1.S1_at	BQ528642	hypothetical protein LOC100194282	-	2e+1	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.14057.2.S1_x_at	AF457961.1	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.18267.1.A1_at	AY222838.1	-	-	2e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.2827.1.A1_at	AY108627.1	-	-	3e+0	At3g51870	binding / transporter	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.4359.2.A1_a_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.7150.3.S1_at	AY109249.1	-	-	2e+0	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3186.1.S1_a_at	CK827152	hypothetical protein LOC100279311	-	4e-4	At5g16070	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.18117.1.S1_at	CN844859	hypothetical protein LOC100191821	-	1e-2	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.6207.3.A1_at	CA403318	60S ribosomal protein L15	-	3e-26	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.4429.1.S1_at	AI714803	hypothetical protein LOC100216759	-	2e+1	At5g24355	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.5053.1.A1_at	CO533193	-	-	2e-7	At5g66850	MAPKKK5	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	ZmAffx.762.1.S1_at	AI746038	-	-	8e-1	At1g78895	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.18116.1.S1_at	CN844693	SNF1-related protein kinase regulatory subunit beta-1	-	4e-1	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.13201.1.A1_at	CA404601	-	-	4e+0	At4g35690	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.6158.1.A1_at	AI676903	hypothetical protein LOC100279569	-	3e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.5106.1.A1_at	AI600864	hypothetical protein LOC100273412	-	1e-20	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.6328.1.A1_at	AY104064.1	hypothetical protein LOC100279888	-	3e+0	At4g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.2591.1.A1_at	CD433382	autophagy-related 8c	-	4e-51	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	ZmAffx.391.1.S1_at	AI676819	-	-	1e-2	At2g25685	SCRL17 (SCR-Like 17)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.6158.1.S1_at	AI676903	-	-	3e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.14125.1.A1_at	CO533246	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.96	Zm.3162.1.A1_at	BM340731	hypothetical protein LOC100279366	-	3e-8	At4g33640	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.96	Zm.5646.2.A1_x_at	AW257823	hypothetical protein LOC100191650	-	3e-41	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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