Co-expression analysis

Gene ID Zm.4618.1.A1_at
Gene name pre-mRNA-splicing factor ISY1
Homology with ArabidopsisSimilar to At3g18790: - (HF=4e-7)
Module size 7 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.6785.80.97Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.6381.10.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.6179.50.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.6077.80.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.5775.10.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.3611.1.S1_atCA403298choline-phosphate cytidylyltransferase B-2e-22At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.55466.1.S1_at, orthologous to the query gene, Zm.4618.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.9GmaAffx.55466.1.S1_atAt3g18790--1e-15At3g18790-O.I.H.G.S.X.
0.5273.1Gma.16338.1.S1_atAt3g18790--6e-31At2g29190APUM2 (Arabidopsis Pumilio 2)O.I.H.G.S.X.
0.4563.9GmaAffx.82412.1.S1_atAt3g18790--1e+1At2g30032unknown proteinO.I.H.G.S.X.
0.4463.3GmaAffx.77090.1.S1_atAt3g18790--6e-1At1g29970RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)O.I.H.G.S.X.
0.4360.6GmaAffx.12718.1.S1_atAt3g18790--4e-1At1g20470auxin-responsive family proteinO.I.H.G.S.X.
0.4158.1Gma.2417.1.S1_atAt3g18790--1e+0At3g15760unknown proteinO.I.H.G.S.X.
0.4057.1Gma.17284.1.A1_atAt3g18790--4e-2At1g51450SPla/RYanodine receptor (SPRY) domain-containing proteinO.I.H.G.S.X.
0.3954.5Gma.1538.1.S1_a_atAt3g18790--2e-6At1g11650RNA-binding protein 45 (RBP45), putativeO.I.H.G.S.X.
0.3548.6Gma.15476.1.S1_x_atAt3g18790--1e-56At3g5258040S ribosomal protein S14 (RPS14C)O.I.H.G.S.X.
0.3548.6GmaAffx.25379.2.S1_atAt3g18790--3e+0At2g26370MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.3346.1Gma.6474.1.A1_s_atAt3g18790--6e-2At2g28700AGL46 (AGAMOUS-LIKE 46)O.I.H.G.S.X.
0.3346.1Gma.17865.1.A1_atAt3g18790--3e-7At3g53110LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)O.I.H.G.S.X.
0.3243.7Gma.15745.1.A1_s_atAt3g18790--1e+1At5g06450nucleic acid bindingO.I.H.G.S.X.
0.3243.7GmaAffx.9610.1.S1_atAt3g18790--3e+0At5g18110NCBP (NOVEL CAP-BINDING PROTEIN)O.I.H.G.S.X.
0.2735.7Gma.17588.3.S1_atAt3g18790--1e-59At1g80490TPR1 (TOPLESS-RELATED 1)O.I.H.G.S.X.
0.2633.9Gma.13137.1.S1_atAt3g18790--9e-7At1g60070binding / clathrin binding / protein binding / protein transporterO.I.H.G.S.X.
0.2532.6Gma.7431.1.S1_atAt3g18790--2e-15At3g11710ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.2228.1Gma.1437.1.S1_atAt3g18790--3e-12At4g34110PAB2 (POLY(A) BINDING 2)O.I.H.G.S.X.
0.2025.1Gma.1538.2.A1_atAt3g18790--2e-5At4g27000ATRBP45CO.I.H.G.S.X.
0.2025.1GmaAffx.75093.1.A1_s_atAt3g18790--1e+1At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.1923.7Gma.3109.1.A1_atAt3g18790--3e+0At2g46090diacylglycerol kinase family proteinO.I.H.G.S.X.
0.1923.7GmaAffx.46220.1.S1_atAt3g18790--1e-29At5g03470ATB' ALPHAO.I.H.G.S.X.
0.1721.2Gma.4039.1.S1_atAt3g18790--3e-18At5g20890chaperonin, putativeO.I.H.G.S.X.
0.1518.7GmaAffx.65750.1.S1_atAt3g18790--3e+0At5g36001-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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