Co-expression analysis

Gene ID	Zm.4603.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=4e-3)
Module size	23 genes
NF	0.35
%ile	36.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	96.7	0.95	Zm.4603.1.S1_at	CK827754	-	-	4e-3	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.463.1.A1_at	U95953.1	viviparous14	-	5e-6	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.2749.1.A1_at	AW067078	-	-	8e-5	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.4209.1.A1_at	CA405195	hypothetical protein LOC100191198	-	2e-5	At5g37370	ATSRL1	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.13581.1.A1_at	BM379129	-	-	2e-4	At5g65460	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.12997.2.S1_at	BF728194	-	-	6e-10	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.6354.2.A1_at	CF569014	hypothetical protein LOC100192793	-	7e-1	At2g45250	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.17585.1.S1_at	AI467721	palmitoyltransferase ZDHHC20	-	1e-11	At4g22750	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.6448.1.A1_at	BG842262	antigenic determinant of rec-A protein	-	3e-18	At1g55460	Kin17 DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.9570.2.A1_x_at	BM078097	-	-	5e+0	At3g22070	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.15705.1.A1_at	CD440189	-	-	1e-4	At4g38270	GAUT3 (Galacturonosyltransferase 3)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.9201.1.A1_at	BM340120	hypothetical protein LOC100272902	-	6e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.12059.1.A1_at	CF244848	hypothetical protein LOC100273055	-	4e+0	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.13811.1.A1_at	AY104705.1	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.1158.1.A1_at	AY107067.1	-	-	4e-31	At5g10270	CDKC	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.2072.1.S1_at	BG842253	-	-	7e-1	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.5095.1.S1_s_at	BM269118	hypothetical protein LOC100192930	-	2e+0	At4g16447	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.677.1.A1_at	AF307152.1	diphosphonucleotide phosphatase 2	-	2e-7	At3g14890	phosphoesterase	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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