CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.4595.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g30190: unknown protein (HF=4e-1)

Module size 6 genes

NF 0.71

%ile 92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.97 Zm.4595.1.A1_at AI737265 - - 4e-1 At1g30190 unknown protein O.I. H.G. S.X.
0.91 99.0 0.97 Zm.4592.1.A1_at BM348651 hypothetical protein LOC100275868 - 8e+0 At5g39690 ANAC093 (Arabidopsis NAC domain containing protein 93) O.I. H.G. S.X.
0.83 95.6 0.97 Zm.18325.1.S1_at CO530408 lipid binding protein - 2e+0 At5g02560 HTA12 O.I. H.G. S.X.
0.67 85.8 0.98 Zm.14536.1.A1_at AY187719.1 SET domain protein SDG117 - 5e-1 At1g55260 lipid binding O.I. H.G. S.X.
0.55 71.6 0.97 Zm.4596.1.A1_at CF636987 lipoxygenase - 4e-1 At5g17670 hydrolase, acting on ester bonds O.I. H.G. S.X.
0.44 55.7 0.97 Zm.17280.1.S1_at CK369569 - - 7e-2 At1g03900 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	77.8	0.97	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	O.I.	H.G.	S.X.
0.91	99.0	0.97	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	O.I.	H.G.	S.X.
0.83	95.6	0.97	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	O.I.	H.G.	S.X.
0.67	85.8	0.98	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	O.I.	H.G.	S.X.
0.55	71.6	0.97	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.
0.44	55.7	0.97	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	89.9	0.96	Zm.6630.1.A1_a_at	CA402660	hypothetical protein LOC100193888 /// hypothetical protein LOC100194042 /// hypothetical protein LOC100276114	-	1e-22	At1g80490	TPR1 (TOPLESS-RELATED 1)	O.I.	H.G.	S.X.
0.67	85.8	0.96	Zm.2870.1.A1_at	AW076473	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.
0.59	76.1	0.94	ZmAffx.973.1.S1_at	AI833889	-	-	1e+1	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.57	75.1	0.95	Zm.7969.1.S1_x_at	CA399140	-	-	1e-25	At1g55090	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.
0.50	65.7	0.96	Zm.4745.1.A1_at	AI739741	hypothetical protein LOC100194119	-	1e-3	At3g55350	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.4321.1.S1_at	AI855098	hypothetical protein LOC100191344	-	2e-1	At3g51600	LTP5 (Lipid transfer protein 5)	O.I.	H.G.	S.X.
0.46	58.4	0.93	Zm.17964.1.A1_at	CK985831	-	-	1e-3	At2g32990	AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)	O.I.	H.G.	S.X.
0.46	58.4	0.96	Zm.5851.9.S1_at	AY105349.1	hypothetical protein LOC100273737	-	4e+0	At5g21970	ubiquitin thiolesterase	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.7501.1.S1_at	BM078707	hypothetical protein LOC100192824	-	7e+0	At5g09570	-	O.I.	H.G.	S.X.
0.41	49.7	0.95	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.17549.2.A1_at	AW267524	hypothetical protein LOC100272329	-	3e-1	At5g14160	F-box family protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	O.I.	H.G.	S.X.
0.38	44.2	0.96	Zm.1451.2.S1_x_at	CF021148	calmodulin	-	2e-111	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.17631.1.A1_at	CK369039	-	-	5e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	O.I.	H.G.	S.X.
0.36	41.3	0.96	Zm.4386.1.A1_at	BM380831	-	-	5e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	O.I.	H.G.	S.X.
0.35	38.9	0.92	Zm.14275.1.A1_at	AY108619.1	verprolin	-	1e+0	At1g35435	-	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.5083.3.A1_at	CF635089	dnaJ protein	-	2e-26	At3g44110	ATJ3	O.I.	H.G.	S.X.
0.31	31.6	0.91	Zm.13472.1.S1_at	AY109019.1	hypothetical protein LOC100274436	-	7e-1	At1g58300	ho4 (HEME OXYGENASE 4)	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.3694.1.A1_at	CF627007	pollen ankyrin-like protein	-	2e+0	At1g19120	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.30	29.8	0.93	Zm.19325.1.S1_at	CO528653	hypothetical protein LOC100191211	-	5e-5	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.19324.1.A1_at	CK986141	hypothetical protein LOC100279823	-	6e-3	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	O.I.	H.G.	S.X.
0.29	28.1	0.94	Zm.7407.1.A1_a_at	BM074289	squalene monooxygenase	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	O.I.	H.G.	S.X.
0.29	28.1	0.95	Zm.1841.1.A1_at	CK828096	hypothetical protein LOC100273189	-	1e+1	At5g42470	-	O.I.	H.G.	S.X.
0.28	28.1	0.96	Zm.4839.1.S1_at	AY103614.1	aldehyde dehydrogenase family 7 member A1	-	6e-33	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	O.I.	H.G.	S.X.
0.27	24.6	0.97	Zm.2836.1.A1_at	AY112208.1	-	-	5e+0	At2g30280	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.94	ZmAffx.878.1.A1_at	AI770796	-	-	1e-2	At1g08050	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.9008.1.A1_x_at	AF371265.1	delta zein structural18 /// prolamin /// prolamin	-	2e+0	At5g61680	pectinesterase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.12742.1.A1_at	CD440044	prefoldin subunit 2	-	1e-1	At1g68490	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	0.95	Zm.18376.1.A1_at	AI615179	hypothetical protein LOC100274438	-	2e-22	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.34.7.S1_at	CD447935	Hypothetical protein LOC100192755	-	7e+0	At4g28210	emb1923 (embryo defective 1923)	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.5796.1.S1_at	AI649702	-	-	3e-41	At1g62750	SCO1 (SNOWY COTYLEDON 1)	O.I.	H.G.	S.X.
0.25	21.3	0.97	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320468 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.2	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.4595.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g30190: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.71
%ile	92.4

Co-expression analysis

Gene ID Zm.4595.1.A1_at Gene name Homology with ArabidopsisSimilar to At1g30190: unknown protein (HF=4e-1) Module size 6 genes NF 0.71 %ile 92.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.4595.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g30190: unknown protein (HF=4e-1)

Module size 6 genes

NF 0.71

%ile 92.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera