Co-expression analysis

Gene ID	Zm.4595.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g30190: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.71
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.97	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.3707.1.A1_at, orthologous to the query gene, Zm.4595.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	HgAffx.3707.1.A1_at	At1g30190	-	-	7e-1	At5g41401	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	99.1	HgAffx.21452.1.S1_at	At1g30190	-	-	1e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.91	98.6	PsAffx.C115000040_at	At1g30190	-	-	4e+0	At4g30097	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.6	PsAffx.C154000024_at	At1g30190	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.90	93.7	HgAffx.15750.1.S1_at	At1g30190	-	-	2e-1	At5g22830	ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)	O.I.	H.G.	S.X.	Please select
0.90	93.7	HgAffx.6560.1.S1_at	At1g30190	-	-	2e+0	At1g65220	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.89	93.5	PsAffx.C68000072_at	At1g30190	-	-	4e+0	At2g41410	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.89	93.5	PsAffx.C47000085_at	At1g30190	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.C177000015_at	At1g30190	-	-	2e-1	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.C32000057_at	At1g30190	-	-	4e+0	At5g47180	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.87	93.2	HgAffx.24315.1.S1_at	At1g30190	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.C119000015_at	At1g30190	-	-	4e-1	At3g18300	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.C10000045_at	At1g30190	-	-	7e+0	At4g38225	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	HgAffx.6540.1.S1_at	At1g30190	-	-	5e+0	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.C86000057_at	At1g30190	-	-	2e+0	At1g06690	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.C48000048_at	At1g30190	-	-	2e+0	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.84	92.6	PsAffx.C141000026_at	At1g30190	-	-	7e-1	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please select
0.83	92.5	HgAffx.21633.1.S1_at	At1g30190	-	-	8e-1	At2g28760	NAD-dependent epimerase/dehydratase family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	PsAffx.C4000116_at	At1g30190	-	-	4e-1	At1g20180	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.55284.1.S1_at	At1g30190	-	-	3e+0	At5g10390	histone H3	O.I.	H.G.	S.X.	Please select
0.82	91.9	HgAffx.11003.1.S1_at	At1g30190	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.82	91.9	HgAffx.5776.1.S1_at	At1g30190	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.82	91.9	HgAffx.19610.1.S1_at	At1g30190	-	-	4e+0	At5g23460	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	91.5	HgAffx.3013.1.S1_at	At1g30190	-	-	3e-1	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.79	90.8	PsAffx.C115000050_s_at	At1g30190	-	-	2e+0	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	PsAffx.C1000175_at	At1g30190	-	-	5e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.77	90.3	PsAffx.C63000067_at	At1g30190	-	-	1e-1	At5g05150	AtATG18e	O.I.	H.G.	S.X.	Please select
0.76	89.7	PsAffx.C46000044_at	At1g30190	-	-	8e-1	At1g66110	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	PsAffx.C6000193_at	At1g30190	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.74	89.2	PsAffx.C85000047_at	At1g30190	-	-	1e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.72	88.1	PsAffx.C137000034_s_at	At1g30190	-	-	2e-1	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.C70000046_at	At1g30190	-	-	3e+0	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	HgAffx.17742.1.S1_at	At1g30190	-	-	1e+0	At5g05250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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