Co-expression analysis

Gene ID	Zm.4578.2.S1_at
Gene name	hypothetical protein LOC100279630 /// MADS1
Homology with Arabidopsis	Similar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=2e-4)
Module size	7 genes
NF	0.49
%ile	63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.4578.2.S1_at	CO521260	hypothetical protein LOC100279630 /// MADS1	-	2e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.1047.1.S1_at	CB381142	hypothetical protein LOC100277178	-	1e+0	At1g10865	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.3611.1.S1_at	CA403298	choline-phosphate cytidylyltransferase B	-	2e-22	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.993.1.S1_at	BE512380	RNA-binding protein 8A	-	5e-1	At1g51510	Y14	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.13827.1.S1_at	CF014663	-	-	2e-9	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.4	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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