Co-expression analysis

Gene ID	Zm.455.2.A1_at
Gene name	dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex
Homology with Arabidopsis	Similar to At3g13930: dihydrolipoamide S-acetyltransferase, putative (HF=2e-13)
Module size	6 genes
NF	0.31
%ile	29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.95	Zm.455.2.A1_at	BM078476	dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex	-	2e-13	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.12546.2.A1_at	AI770557	-	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.5289.2.A1_a_at	AI600945	hypothetical protein LOC100274172	-	1e-30	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.94	Zm.16281.2.S1_at	CA409032	Histone H3.2	-	9e-21	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.95	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1620838_at, orthologous to the query gene, Zm.455.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	1620838_at	At3g13930	hypothetical protein LOC100251405	-	6e-29	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	1606962_at	At3g13930	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	1609082_at	At3g13930	hypothetical protein LOC100242522	-	8e-5	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1613829_at	At3g13930	hypothetical protein LOC100256716	-	6e-18	At1g57620	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1620975_at	At3g13930	hypothetical protein LOC100258366	-	7e-55	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.47	67.7	1609821_at	At3g13930	-	-	5e-6	At3g60250	CKB3	O.I.	H.G.	S.X.	Please select
0.45	64.6	1616941_at	At3g13930	hypothetical protein LOC100248410	-	2e-39	At1g07830	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620666_at	At3g13930	hypothetical protein LOC100257000	-	2e-12	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607141_at	At3g13930	hypothetical protein LOC100254376	-	1e-77	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615712_s_at	At3g13930	similar to nascent polypeptide associated complex alpha	-	2e-43	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1619744_at	At3g13930	hypothetical protein LOC100249117	-	2e-94	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	1609981_at	At3g13930	hypothetical protein LOC100247386	-	2e-11	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1622560_at	At3g13930	hypothetical protein LOC100265315	-	3e-27	At3g52850	VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1619316_s_at	At3g13930	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615911_at	At3g13930	hypothetical protein LOC100243469	-	2e-66	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1607648_s_at	At3g13930	hypothetical protein LOC100241287	-	1e-7	At1g08480	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1612977_at	At3g13930	hypothetical protein LOC100266745	-	5e-53	At3g60250	CKB3	O.I.	H.G.	S.X.	Please select
0.37	51.7	1616861_s_at	At3g13930	hypothetical protein LOC100244246	-	9e-11	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1612973_s_at	At3g13930	hypothetical protein LOC100267064	-	7e-43	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1618939_at	At3g13930	hypothetical protein LOC100242502	-	1e-3	At2g47970	NPL4 family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612909_at	At3g13930	hypothetical protein LOC100264659	-	3e-8	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1619569_at	At3g13930	hypothetical protein LOC100250036	-	2e-30	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614840_at	At3g13930	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.34	46.8	1610373_at	At3g13930	hypothetical protein LOC100242638	-	1e-20	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614425_at	At3g13930	hypothetical protein LOC100251424	-	8e-7	At3g02200	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619414_at	At3g13930	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1616088_at	At3g13930	-	-	1e-48	At5g58060	YKT61	O.I.	H.G.	S.X.	Please select
0.29	37.7	1607405_at	At3g13930	hypothetical protein LOC100261003	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614734_s_at	At3g13930	hypothetical protein LOC100241422	-	4e-2	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1619907_at	At3g13930	similar to 26S proteasome subunit RPN5b	-	3e-26	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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