Co-expression analysis

Gene ID	Zm.4510.1.A1_a_at
Gene name	hypothetical protein LOC100277304
Homology with Arabidopsis	Similar to At5g24879: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.24
%ile	19.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.4510.1.A1_a_at	CF636202	hypothetical protein LOC100277304	-	6e-1	At5g24879	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.17181.1.S1_at	CK145306	-	-	7e-17	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.3396.1.S1_at	AY107588.1	mtN19-like protein	-	2e+1	At5g51830	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.95	Zm.4820.1.A1_x_at	BG319643	hypothetical protein LOC100192684	-	1e-35	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.12955.1.A1_at	CA402356	-	-	6e-1	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.97	Zm.10174.1.S1_at	AY111125.1	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the wheat gene, Ta.20824.1.S1_at, orthologous to the query gene, Zm.4510.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.20824.1.S1_at	At5g24879	-	-	2e-1	At5g24879	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.24773.1.S1_at	At5g24879	-	-	1e+1	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.84292.1.S1_at	At5g24879	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.25096.1.S1_at	At5g24879	-	-	9e-1	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.25400.1.A1_at	At5g24879	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.8167.2.S1_x_at	At5g24879	-	-	4e-1	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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