Co-expression analysis

Gene ID	Zm.4424.1.A1_at
Gene name	m24 protein
Homology with Arabidopsis	Similar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=5e-2)
Module size	16 genes
NF	0.63
%ile	84.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.99	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.80	94.0	1.00	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.75	90.8	1.00	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	1.00	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please select
0.69	86.5	1.00	Zm.9517.1.A1_at	BM269495	-	-	2e+1	Atmg00630	-	O.I.	H.G.	S.X.	Please select
0.65	82.1	1.00	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	1.00	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.63	81.1	1.00	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	1.00	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.59	76.1	1.00	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	O.I.	H.G.	S.X.	Please select
0.58	75.1	1.00	ZmAffx.1052.1.S1_at	AI881839	KH domain containing protein	-	3e+0	At1g75090	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	1.00	Zm.17267.1.S1_at	CK368940	hypothetical protein LOC100275082	-	5e-1	At1g80920	J8	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	1.00	Zm.12739.1.S1_at	BG835843	SR repressor protein	-	2e-1	At3g55460	SCL30	O.I.	H.G.	S.X.	Please select
0.52	67.3	1.00	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.43	52.8	1.00	ZmAffx.104.1.A1_at	AI665536	hypothetical protein LOC100273079	-	8e-1	At2g34980	SETH1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	97.8	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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