Co-expression analysis

Gene ID	Zm.4392.2.A1_a_at
Gene name	Ran-related GTP binding protein
Homology with Arabidopsis	Similar to At5g20020: RAN2 (HF=3e-63)
Module size	9 genes
NF	0.49
%ile	61.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.92	Zm.4392.2.A1_a_at	AW787551	Ran-related GTP binding protein	-	3e-63	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.9826.1.A1_at	BM332738	-	-	1e+0	At3g28680	prolylcarboxypeptidase-related	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.94	Zm.11612.1.A1_at	CF634224	-	-	3e-1	At1g06135	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	Zm.18788.1.S1_at	CO525699	hypothetical protein LOC100191721	-	8e-1	At4g21366	ATP binding / protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	Zm.4513.1.A1_at	CA405232	-	-	3e+0	At2g41280	M10	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	Zm.9387.1.A1_at	BM268482	Hypothetical protein LOC100193233	-	4e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.17520.1.A1_a_at	CF633076	-	-	3e-2	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.9706.1.A1_at	BM336274	-	-	4e+0	At1g70000	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.3726.1.A1_at	AY105990.1	hypothetical protein LOC100274504	-	2e-1	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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