Co-expression analysis

Gene ID Zm.4391.1.S1_at
Gene name hypothetical protein LOC100194157
Homology with ArabidopsisSimilar to At3g46600: scarecrow transcription factor family protein (HF=3e-2)
Module size 34 genes
NF 0.74
%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.30.94Zm.4391.1.S1_atCK786802hypothetical protein LOC100194157-3e-2At3g46600scarecrow transcription factor family proteinO.I.H.G.S.X.
0.9299.20.97Zm.13348.1.S1_atAF178976.1adenosine-5'-phosphosulfate kinase-1e-11At2g14750APK (APS KINASE)O.I.H.G.S.X.
0.9199.00.97Zm.5866.1.S1_atCF044154AP-1 complex subunit sigma-2-5e-38At2g17380AP19O.I.H.G.S.X.
0.8996.80.97Zm.5867.2.A1_atAY104476.1--1e+1At4g19645-O.I.H.G.S.X.
0.8896.70.95Zm.17473.1.A1_atCK368692--4e+0At3g61660unknown proteinO.I.H.G.S.X.
0.8796.40.97Zm.949.1.A1_s_atCF624182hypothetical protein LOC100280024-1e-1At5g15970KIN2O.I.H.G.S.X.
0.8696.30.97Zm.17570.1.A1_atCK144848hypothetical protein LOC100191532-5e+0At1g21928-O.I.H.G.S.X.
0.8696.30.97Zm.2199.3.A1_atBM074529hypothetical protein LOC100276113-1e-1At5g17460unknown proteinO.I.H.G.S.X.
0.8696.30.97Zm.18021.1.S1_atCK368623Hypothetical protein LOC100194051-4e+0At3g50845-O.I.H.G.S.X.
0.8495.80.96Zm.9244.1.A1_atBQ538694hypothetical protein LOC100194342-7e-10At5g08710regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-relatedO.I.H.G.S.X.
0.8395.60.96ZmAffx.596.1.A1_atAI715024--8e-1At1g21940unknown proteinO.I.H.G.S.X.
0.8294.60.95Zm.3431.1.A1_atBQ539543ubiquitin-like protein-4e-4At5g57860ubiquitin family proteinO.I.H.G.S.X.
0.8194.30.97Zm.1477.1.S1_atAY106401.1hypothetical protein LOC100193410-5e-1At5g25480DNMT2 (DNA METHYLTRANSFERASE-2)O.I.H.G.S.X.
0.8094.00.98ZmAffx.570.1.A1_atAI714682hypothetical protein LOC100191413-1e-2At2g04280unknown proteinO.I.H.G.S.X.
0.7992.80.97Zm.5119.2.A1_atCF637544--2e+0At5g36140CYP716A2O.I.H.G.S.X.
0.7892.50.96Zm.7780.1.A1_atCD433445hypothetical protein LOC100274595-1e-7At4g19230CYP707A1O.I.H.G.S.X.
0.7792.10.94Zm.17811.1.A1_atCK371645PP2A regulatory subunit TAP46-1e+0At4g14020rapid alkalinization factor (RALF) family proteinO.I.H.G.S.X.
0.7691.10.97Zm.12583.1.A1_atAF527615.1histone H1-like protein HON101-7e+0At5g42000ORMDL family proteinO.I.H.G.S.X.
0.7691.10.97Zm.12699.1.A1_atBQ487145hypothetical protein LOC100272460-1e+0At2g33793unknown proteinO.I.H.G.S.X.
0.7590.80.97ZmAffx.952.1.A1_atAI833424ubiquitin-protein ligase-7e+0At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.7490.30.97Zm.10500.1.S1_atCA827201--1e+0At1g07485unknown proteinO.I.H.G.S.X.
0.7389.90.97ZmAffx.473.1.A1_atAI677499Starch synthase IIIb-2 precursor-3e+0At3g12145FLR1O.I.H.G.S.X.
0.7288.60.97Zm.16092.1.S1_atAY100481.1nucleosome/chromatin assembly factor group C-3e-63At2g19520FVEO.I.H.G.S.X.
0.7188.20.97Zm.9389.3.A1_a_atCF633932catalytic/ protein phosphatase type 2C-4e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.6785.80.97Zm.9897.1.A1_atBM331892hypothetical protein LOC100279693-6e-3At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.
0.6682.30.96Zm.5655.2.A1_a_atAY107995.1hypothetical protein LOC100272896-4e-9At2g14910unknown proteinO.I.H.G.S.X.
0.6582.10.97Zm.16513.10.A1_x_atAI739773hypothetical protein LOC100191561 /// hypothetical protein LOC100217303-4e-15At3g12110ACT11 (actin-11)O.I.H.G.S.X.
0.6279.80.97Zm.13422.1.A1_atCD946114hypothetical protein LOC100217229-6e-1At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.6179.50.97Zm.5864.1.A1_atAW225271--3e-22At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.6077.80.96Zm.17803.1.S1_atCK371473--1e+0At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5875.10.97Zm.1396.1.A1_atCK827228hypothetical protein LOC100278993-2e+0At2g12900DNA binding / transcription factorO.I.H.G.S.X.
0.5267.30.97Zm.17903.1.S1_atCK786767hypothetical protein LOC100279454-1e+0At5g20850ATRAD51O.I.H.G.S.X.
0.4759.90.97Zm.18399.1.A1_atCO534452--2e+0At5g15560unknown proteinO.I.H.G.S.X.
0.3844.20.97ZmAffx.57.1.S1_atAI665066--1e+1At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.793.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.692.9GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.692.9GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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