Co-expression analysis

Gene ID	Zm.4377.2.A1_a_at
Gene name	hypothetical protein LOC100193789 /// ubiquitin-conjugating enzyme E2 J2
Homology with Arabidopsis	Similar to At1g17280: UBC34 (ubiquitin-conjugating enzyme 34) (HF=2e-4)
Module size	16 genes
NF	0.58
%ile	77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.5	0.97	Zm.4377.2.A1_a_at	AI714705	hypothetical protein LOC100193789 /// ubiquitin-conjugating enzyme E2 J2	-	2e-4	At1g17280	UBC34 (ubiquitin-conjugating enzyme 34)	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.98	Zm.2157.8.S1_at	BI096578	Hypothetical protein LOC100193584	-	8e-1	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.10174.1.A1_at	AY111125.1	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.5656.1.A1_at	BG837879	PAS2	-	2e-13	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.6180.1.S1_at	CF031407	hypothetical protein LOC100277615	-	1e-5	At4g10430	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.5592.1.S1_at	AY111384.1	-	-	9e-2	At5g66052	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.62.1.S1_at	X55314.1	anthocyaninless2	-	6e+0	At4g28050	TET7 (TETRASPANIN7)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.5305.1.A1_at	CK370425	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.5570.1.A1_at	CF646219	hypothetical protein LOC100191759	-	2e-4	At4g24890	PAP24 (PURPLE ACID PHOSPHATASE 24)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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