Co-expression analysis

Gene ID	Zm.4339.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g47410: unknown protein (HF=1e+0)
Module size	8 genes
NF	0.45
%ile	54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	0.97	Zm.4339.1.A1_at	AI711931	-	-	1e+0	At1g47410	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	Zm.17687.1.S1_at	CK370166	-	-	2e-1	At1g30972	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.10826.1.S1_at	BQ619411	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.6604.1.A1_at	AI467695	hypothetical protein LOC100280387	-	5e+0	At3g18160	peroxin-3 family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.5290.2.S1_at	AY104608.1	-	-	5e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.13409.1.S1_at	AF457934.1	3-oxoacyl-synthase III	-	6e-2	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.7276.1.S1_at	BI674107	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.236.1.S1_at	AJ011615.1	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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