CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.4338.3.S1_at

Gene name
Homology with Arabidopsis Similar to At5g27170: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.59

%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.96 Zm.4338.3.S1_at AW000126 - - 3e+0 At5g27170 unknown protein O.I. H.G. S.X.
0.91 99.0 0.96 Zm.1402.1.S1_at BF729248 - - 4e+0 At1g29040 unknown protein O.I. H.G. S.X.
0.80 94.0 0.96 Zm.4350.1.A1_at AW091239 - - 1e+0 At5g49334 unknown protein O.I. H.G. S.X.
0.73 89.9 0.96 Zm.13325.1.S1_at BQ279643 - - 3e+0 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 O.I. H.G. S.X.
0.37 42.3 0.96 Zm.13484.1.S1_at AY108906.1 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.32 33.4 0.96 Zm.3875.1.S1_at BQ539306 - - 2e-31 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	0.96	Zm.4338.3.S1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.
0.91	99.0	0.96	Zm.1402.1.S1_at	BF729248	-	-	4e+0	At1g29040	unknown protein	O.I.	H.G.	S.X.
0.80	94.0	0.96	Zm.4350.1.A1_at	AW091239	-	-	1e+0	At5g49334	unknown protein	O.I.	H.G.	S.X.
0.73	89.9	0.96	Zm.13325.1.S1_at	BQ279643	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.
0.37	42.3	0.96	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.32	33.4	0.96	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	89.9	0.95	Zm.9513.1.A1_at	BM349310	-	-	1e+0	At1g50340	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.73	89.9	0.95	Zm.19174.1.A1_at	CO533891	NAD(P)H-dependent oxidoreductase	-	5e+0	At4g00920	COP1-interacting protein-related	O.I.	H.G.	S.X.
0.67	85.8	0.95	Zm.5771.1.A1_at	BM336016	tobamovirus multiplication 3	-	5e-25	At1g14530	THH1 (TOM THREE HOMOLOG 1)	O.I.	H.G.	S.X.
0.55	71.6	0.85	ZmAffx.625.1.S1_at	AI715053	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.
0.52	67.3	0.94	Zm.3531.1.A1_at	BQ035123	p5cs	-	5e-12	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	O.I.	H.G.	S.X.
0.46	58.4	0.89	Zm.12244.2.A1_x_at	AW267221	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.46	58.4	0.90	Zm.13647.1.S1_at	AY107242.1	metal transporter Nramp3	-	3e-12	At5g67330	ATNRAMP4	O.I.	H.G.	S.X.
0.40	48.5	0.95	ZmAffx.199.1.A1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	O.I.	H.G.	S.X.
0.36	41.3	0.92	Zm.10463.1.S1_at	BQ578145	-	-	1e+0	At5g38970	BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1)	O.I.	H.G.	S.X.
0.35	38.9	0.78	Zm.18365.1.A1_at	CF626505	-	-	1e-3	At1g13750	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.33	36.0	0.82	Zm.7080.1.A1_at	BM080239	hypothetical protein LOC100192783	-	2e-13	At1g57660	60S ribosomal protein L21 (RPL21E)	O.I.	H.G.	S.X.
0.33	36.0	0.93	Zm.18877.1.A1_at	CO529651	protein phosphatase 2C	-	3e-1	At4g16580	catalytic	O.I.	H.G.	S.X.
0.33	36.0	0.95	Zm.14463.1.A1_at	BM336602	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.
0.31	31.6	0.93	Zm.8548.1.A1_at	BM339575	hypothetical protein LOC100279117	-	2e+0	At2g36680	-	O.I.	H.G.	S.X.
0.31	31.6	0.95	Zm.3505.1.A1_at	AW091289	hypothetical protein LOC100191273	-	1e-11	At2g03290	protein transmembrane transporter	O.I.	H.G.	S.X.
0.30	29.8	0.91	Zm.12994.1.S1_at	CF627591	-	-	7e-4	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.29	28.1	0.87	Zm.1208.4.S1_x_at	BU197444	Histone H4	-	4e-13	At3g46320	histone H4	O.I.	H.G.	S.X.
0.28	28.1	0.89	Zm.8959.1.A1_at	BM335622	-	-	5e-3	At3g18350	unknown protein	O.I.	H.G.	S.X.
0.28	28.1	0.95	Zm.17537.1.S1_at	BM347272	-	-	9e-1	At5g04120	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.2300.1.A1_at	AY108971.1	-	-	2e-1	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	O.I.	H.G.	S.X.
0.27	24.6	0.86	Zm.8962.1.A1_at	CA404175	hypothetical protein LOC100274282	-	1e-17	At4g31780	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	O.I.	H.G.	S.X.
0.27	24.6	0.92	Zm.7578.1.A1_at	BM079026	-	-	9e-2	At4g30460	glycine-rich protein	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.4223.1.S1_at	CK827734	purple acid phosphatase	-	2e+0	At1g52940	PAP5 (PURPLE ACID PHOSPHATASE 5)	O.I.	H.G.	S.X.
0.25	21.3	0.91	Zm.889.3.S1_at	AI834601	-	-	3e-4	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.5850.1.A1_at	CF623894	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.4 99.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3 99.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8 99.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4 99.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.4	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.4338.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g27170: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.59
%ile	78.7

Co-expression analysis

Gene ID Zm.4338.3.S1_at Gene name Homology with ArabidopsisSimilar to At5g27170: unknown protein (HF=3e+0) Module size 6 genes NF 0.59 %ile 78.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.4338.3.S1_at

Gene name
Homology with Arabidopsis Similar to At5g27170: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.59

%ile 78.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera