Co-expression analysis

Gene ID	Zm.4338.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g27170: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.59
%ile	78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.4338.3.S1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.96	Zm.1402.1.S1_at	BF729248	-	-	4e+0	At1g29040	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.4350.1.A1_at	AW091239	-	-	1e+0	At5g49334	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.13325.1.S1_at	BQ279643	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.4	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112963.1.S1_at, orthologous to the query gene, Zm.4338.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	TaAffx.112963.1.S1_at	At5g27170	-	-	1e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.19023.1.S1_at	At5g27170	-	-	4e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	TaAffx.95676.1.S1_at	At5g27170	-	-	6e-1	At4g18450	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.5252.3.S1_x_at	At5g27170	-	-	2e+1	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.56381.1.S1_at	At5g27170	-	-	7e-1	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.14132.3.S1_x_at	At5g27170	-	-	4e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.84085.1.S1_at	At5g27170	-	-	4e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.56735.1.S1_at	At5g27170	-	-	4e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.26186.1.A1_at	At5g27170	-	-	2e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.79037.1.S1_at	At5g27170	-	-	1e+1	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.18965.2.S1_at	At5g27170	-	-	7e-2	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.9327.1.S1_at	At5g27170	-	-	1e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.51582.1.S1_x_at	At5g27170	-	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.25574.2.S1_x_at	At5g27170	-	-	4e+0	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.21092.1.S1_at	At5g27170	alkaline invertase	-	1e-9	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.20421.2.A1_at	At5g27170	-	-	2e+1	At5g37070	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.25574.2.S1_at	At5g27170	-	-	4e+0	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.1846.1.S1_x_at	At5g27170	-	-	2e-1	At3g53140	O-diphenol-O-methyl transferase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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